Literature DB >> 23702417

Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project.

Kamil Uğurbil1, Junqian Xu, Edward J Auerbach, Steen Moeller, An T Vu, Julio M Duarte-Carvajalino, Christophe Lenglet, Xiaoping Wu, Sebastian Schmitter, Pierre Francois Van de Moortele, John Strupp, Guillermo Sapiro, Federico De Martino, Dingxin Wang, Noam Harel, Michael Garwood, Liyong Chen, David A Feinberg, Stephen M Smith, Karla L Miller, Stamatios N Sotiropoulos, Saad Jbabdi, Jesper L R Andersson, Timothy E J Behrens, Matthew F Glasser, David C Van Essen, Essa Yacoub.   

Abstract

The Human Connectome Project (HCP) relies primarily on three complementary magnetic resonance (MR) methods. These are: 1) resting state functional MR imaging (rfMRI) which uses correlations in the temporal fluctuations in an fMRI time series to deduce 'functional connectivity'; 2) diffusion imaging (dMRI), which provides the input for tractography algorithms used for the reconstruction of the complex axonal fiber architecture; and 3) task based fMRI (tfMRI), which is employed to identify functional parcellation in the human brain in order to assist analyses of data obtained with the first two methods. We describe technical improvements and optimization of these methods as well as instrumental choices that impact speed of acquisition of fMRI and dMRI images at 3T, leading to whole brain coverage with 2 mm isotropic resolution in 0.7 s for fMRI, and 1.25 mm isotropic resolution dMRI data for tractography analysis with three-fold reduction in total dMRI data acquisition time. Ongoing technical developments and optimization for acquisition of similar data at 7 T magnetic field are also presented, targeting higher spatial resolution, enhanced specificity of functional imaging signals, mitigation of the inhomogeneous radio frequency (RF) fields, and reduced power deposition. Results demonstrate that overall, these approaches represent a significant advance in MR imaging of the human brain to investigate brain function and structure.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23702417      PMCID: PMC3740184          DOI: 10.1016/j.neuroimage.2013.05.012

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  137 in total

1.  Analysis of wave behavior in lossy dielectric samples at high field.

Authors:  Qing X Yang; Jinghua Wang; Xiaoliang Zhang; Christopher M Collins; Michael B Smith; Haiying Liu; Xiao-Hong Zhu; J Thomas Vaughan; Kamil Ugurbil; Wei Chen
Journal:  Magn Reson Med       Date:  2002-05       Impact factor: 4.668

2.  Generalized autocalibrating partially parallel acquisitions (GRAPPA).

Authors:  Mark A Griswold; Peter M Jakob; Robin M Heidemann; Mathias Nittka; Vladimir Jellus; Jianmin Wang; Berthold Kiefer; Axel Haase
Journal:  Magn Reson Med       Date:  2002-06       Impact factor: 4.668

3.  Microvascular BOLD contribution at 4 and 7 T in the human brain: gradient-echo and spin-echo fMRI with suppression of blood effects.

Authors:  Timothy Q Duong; Essa Yacoub; Gregory Adriany; Xiaoping Hu; Kâmil Ugurbil; Seong-Gi Kim
Journal:  Magn Reson Med       Date:  2003-06       Impact factor: 4.668

4.  Reduction of eddy-current-induced distortion in diffusion MRI using a twice-refocused spin echo.

Authors:  T G Reese; O Heid; R M Weisskoff; V J Wedeen
Journal:  Magn Reson Med       Date:  2003-01       Impact factor: 4.668

5.  Signal and noise characteristics of Hahn SE and GE BOLD fMRI at 7 T in humans.

Authors:  Essa Yacoub; Pierre-Francois Van De Moortele; Amir Shmuel; Kâmil Uğurbil
Journal:  Neuroimage       Date:  2005-02-01       Impact factor: 6.556

6.  Quantifying the spatial resolution of the gradient echo and spin echo BOLD response at 3 Tesla.

Authors:  Laura M Parkes; Jens V Schwarzbach; Annemieke A Bouts; Roel H R Deckers; Pim Pullens; Christian M Kerskens; David G Norris
Journal:  Magn Reson Med       Date:  2005-12       Impact factor: 4.668

7.  A geometrically adjustable 16-channel transmit/receive transmission line array for improved RF efficiency and parallel imaging performance at 7 Tesla.

Authors:  Gregor Adriany; Pierre-Francois Van de Moortele; Johannes Ritter; Steen Moeller; Edward J Auerbach; Can Akgün; Carl J Snyder; Thomas Vaughan; Kâmil Uğurbil
Journal:  Magn Reson Med       Date:  2008-03       Impact factor: 4.668

8.  Local B1+ shimming for prostate imaging with transceiver arrays at 7T based on subject-dependent transmit phase measurements.

Authors:  Gregory J Metzger; Carl Snyder; Can Akgun; Tommy Vaughan; Kamil Ugurbil; Pierre-Francois Van de Moortele
Journal:  Magn Reson Med       Date:  2008-02       Impact factor: 4.668

9.  Prospective and retrospective motion correction in diffusion magnetic resonance imaging of the human brain.

Authors:  Tobias Kober; Rolf Gruetter; Gunnar Krueger
Journal:  Neuroimage       Date:  2011-07-13       Impact factor: 6.556

10.  Layer-specific fMRI reflects different neuronal computations at different depths in human V1.

Authors:  Cheryl A Olman; Noam Harel; David A Feinberg; Sheng He; Peng Zhang; Kamil Ugurbil; Essa Yacoub
Journal:  PLoS One       Date:  2012-03-20       Impact factor: 3.240

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  325 in total

1.  High-resolution imaging of distinct human corpus callosum microstructure and topography of structural connectivity to cortices at high field.

Authors:  Byeong-Yeul Lee; Xiao-Hong Zhu; Xiufeng Li; Wei Chen
Journal:  Brain Struct Funct       Date:  2018-12-03       Impact factor: 3.270

2.  Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited.

Authors:  Cibu Thomas; Frank Q Ye; M Okan Irfanoglu; Pooja Modi; Kadharbatcha S Saleem; David A Leopold; Carlo Pierpaoli
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

3.  High-Resolution Functional Connectivity Density: Hub Locations, Sensitivity, Specificity, Reproducibility, and Reliability.

Authors:  Dardo Tomasi; Ehsan Shokri-Kojori; Nora D Volkow
Journal:  Cereb Cortex       Date:  2015-07-28       Impact factor: 5.357

4.  Improved estimation of subject-level functional connectivity using full and partial correlation with empirical Bayes shrinkage.

Authors:  Amanda F Mejia; Mary Beth Nebel; Anita D Barber; Ann S Choe; James J Pekar; Brian S Caffo; Martin A Lindquist
Journal:  Neuroimage       Date:  2018-02-14       Impact factor: 6.556

5.  Frontostriatal network dysfunction as a domain-general mechanism underlying phantom perception.

Authors:  Jeffrey Hullfish; Ian Abenes; Hye Bin Yoo; Dirk De Ridder; Sven Vanneste
Journal:  Hum Brain Mapp       Date:  2019-01-15       Impact factor: 5.038

Review 6.  Magnetic Resonance Imaging technology-bridging the gap between noninvasive human imaging and optical microscopy.

Authors:  Jonathan R Polimeni; Lawrence L Wald
Journal:  Curr Opin Neurobiol       Date:  2018-05-11       Impact factor: 6.627

7.  Cortical fibers orientation mapping using in-vivo whole brain 7 T diffusion MRI.

Authors:  Omer F Gulban; Federico De Martino; An T Vu; Essa Yacoub; Kamil Uğurbil; Christophe Lenglet
Journal:  Neuroimage       Date:  2018-05-10       Impact factor: 6.556

8.  Simultaneous Time Interleaved MultiSlice (STIMS) for Rapid Susceptibility Weighted acquisition.

Authors:  Berkin Bilgic; Huihui Ye; Lawrence L Wald; Kawin Setsompop
Journal:  Neuroimage       Date:  2017-04-20       Impact factor: 6.556

9.  Evaluation of Denoising Strategies to Address Motion-Correlated Artifacts in Resting-State Functional Magnetic Resonance Imaging Data from the Human Connectome Project.

Authors:  Gregory C Burgess; Sridhar Kandala; Dan Nolan; Timothy O Laumann; Jonathan D Power; Babatunde Adeyemo; Michael P Harms; Steven E Petersen; Deanna M Barch
Journal:  Brain Connect       Date:  2016-09-30

Review 10.  The Human Connectome Project's neuroimaging approach.

Authors:  Matthew F Glasser; Stephen M Smith; Daniel S Marcus; Jesper L R Andersson; Edward J Auerbach; Timothy E J Behrens; Timothy S Coalson; Michael P Harms; Mark Jenkinson; Steen Moeller; Emma C Robinson; Stamatios N Sotiropoulos; Junqian Xu; Essa Yacoub; Kamil Ugurbil; David C Van Essen
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

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