Literature DB >> 23362247

RubiX: combining spatial resolutions for Bayesian inference of crossing fibers in diffusion MRI.

Stamatios N Sotiropoulos1, Saad Jbabdi, Jesper L Andersson, Mark W Woolrich, Kamil Ugurbil, Timothy E J Behrens.   

Abstract

The trade-off between signal-to-noise ratio (SNR) and spatial specificity governs the choice of spatial resolution in magnetic resonance imaging (MRI); diffusion-weighted (DW) MRI is no exception. Images of lower resolution have higher signal to noise ratio, but also more partial volume artifacts. We present a data-fusion approach for tackling this trade-off by combining DW MRI data acquired both at high and low spatial resolution. We combine all data into a single Bayesian model to estimate the underlying fiber patterns and diffusion parameters. The proposed model, therefore, combines the benefits of each acquisition. We show that fiber crossings at the highest spatial resolution can be inferred more robustly and accurately using such a model compared to a simpler model that operates only on high-resolution data, when both approaches are matched for acquisition time.

Entities:  

Mesh:

Year:  2013        PMID: 23362247      PMCID: PMC3767112          DOI: 10.1109/TMI.2012.2231873

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  32 in total

1.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm.

Authors:  Y Zhang; M Brady; S Smith
Journal:  IEEE Trans Med Imaging       Date:  2001-01       Impact factor: 10.048

2.  Reconstruction of the orientation distribution function in single- and multiple-shell q-ball imaging within constant solid angle.

Authors:  Iman Aganj; Christophe Lenglet; Guillermo Sapiro; Essa Yacoub; Kamil Ugurbil; Noam Harel
Journal:  Magn Reson Med       Date:  2010-08       Impact factor: 4.668

3.  NODDI: practical in vivo neurite orientation dispersion and density imaging of the human brain.

Authors:  Hui Zhang; Torben Schneider; Claudia A Wheeler-Kingshott; Daniel C Alexander
Journal:  Neuroimage       Date:  2012-03-30       Impact factor: 6.556

4.  Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging.

Authors:  Van J Wedeen; Patric Hagmann; Wen-Yih Isaac Tseng; Timothy G Reese; Robert M Weisskoff
Journal:  Magn Reson Med       Date:  2005-12       Impact factor: 4.668

Review 5.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

6.  Measurement of signal-to-noise ratios in MR images: influence of multichannel coils, parallel imaging, and reconstruction filters.

Authors:  Olaf Dietrich; José G Raya; Scott B Reeder; Maximilian F Reiser; Stefan O Schoenberg
Journal:  J Magn Reson Imaging       Date:  2007-08       Impact factor: 4.813

7.  Hybrid diffusion imaging.

Authors:  Yu-Chien Wu; Andrew L Alexander
Journal:  Neuroimage       Date:  2007-03-24       Impact factor: 6.556

8.  Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging.

Authors:  Ben Jeurissen; Alexander Leemans; Jacques-Donald Tournier; Derek K Jones; Jan Sijbers
Journal:  Hum Brain Mapp       Date:  2012-05-19       Impact factor: 5.038

9.  A regularized two-tensor model fit to low angular resolution diffusion images using basis directions.

Authors:  Stamatios N Sotiropoulos; Li Bai; Paul S Morgan; Dorothee P Auer; Cris S Constantinescu; Christopher R Tench
Journal:  J Magn Reson Imaging       Date:  2008-07       Impact factor: 4.813

10.  Model-based analysis of multishell diffusion MR data for tractography: how to get over fitting problems.

Authors:  Saad Jbabdi; Stamatios N Sotiropoulos; Alexander M Savio; Manuel Graña; Timothy E J Behrens
Journal:  Magn Reson Med       Date:  2012-02-14       Impact factor: 4.668

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  16 in total

1.  Estimation of white matter fiber parameters from compressed multiresolution diffusion MRI using sparse Bayesian learning.

Authors:  Pramod Kumar Pisharady; Stamatios N Sotiropoulos; Julio M Duarte-Carvajalino; Guillermo Sapiro; Christophe Lenglet
Journal:  Neuroimage       Date:  2017-06-29       Impact factor: 6.556

2.  Sparse Bayesian Inference of White Matter Fiber Orientations from Compressed Multi-resolution Diffusion MRI.

Authors:  Pramod Kumar Pisharady; Julio M Duarte-Carvajalino; Stamatios N Sotiropoulos; Guillermo Sapiro; Christophe Lenglet
Journal:  Med Image Comput Comput Assist Interv       Date:  2015-11-18

3.  Highly Reproducible Whole Brain Parcellation in Individuals via Voxel Annotation with Fiber Clusters.

Authors:  Ye Wu; Sahar Ahmad; Pew-Thian Yap
Journal:  Med Image Comput Comput Assist Interv       Date:  2021-09-21

Review 4.  Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact.

Authors:  Qiuyun Fan; Cornelius Eichner; Maryam Afzali; Lars Mueller; Chantal M W Tax; Mathias Davids; Mirsad Mahmutovic; Boris Keil; Berkin Bilgic; Kawin Setsompop; Hong-Hsi Lee; Qiyuan Tian; Chiara Maffei; Gabriel Ramos-Llordén; Aapo Nummenmaa; Thomas Witzel; Anastasia Yendiki; Yi-Qiao Song; Chu-Chung Huang; Ching-Po Lin; Nikolaus Weiskopf; Alfred Anwander; Derek K Jones; Bruce R Rosen; Lawrence L Wald; Susie Y Huang
Journal:  Neuroimage       Date:  2022-02-23       Impact factor: 7.400

5.  A variable resolution approach for improved acquisition of hyperpolarized 13 C metabolic MRI.

Authors:  Jeremy W Gordon; Adam W Autry; Shuyu Tang; Jasmine Y Graham; Robert A Bok; Xucheng Zhu; Javier E Villanueva-Meyer; Yan Li; Michael A Ohilger; Maria Roselle Abraham; Duan Xu; Daniel B Vigneron; Peder E Z Larson
Journal:  Magn Reson Med       Date:  2020-07-22       Impact factor: 4.668

Review 6.  Estimating Brain Connectivity With Diffusion-Weighted Magnetic Resonance Imaging: Promise and Peril.

Authors:  Mark D Grier; Jan Zimmermann; Sarah R Heilbronner
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2020-04-27

Review 7.  Measuring macroscopic brain connections in vivo.

Authors:  Saad Jbabdi; Stamatios N Sotiropoulos; Suzanne N Haber; David C Van Essen; Timothy E Behrens
Journal:  Nat Neurosci       Date:  2015-10-27       Impact factor: 24.884

Review 8.  Diffusion Imaging in the Post HCP Era.

Authors:  Steen Moeller; Pramod Pisharady Kumar; Jesper Andersson; Mehmet Akcakaya; Noam Harel; Ruoyun Emily Ma; Xiaoping Wu; Essa Yacoub; Christophe Lenglet; Kamil Ugurbil
Journal:  J Magn Reson Imaging       Date:  2020-06-20       Impact factor: 5.119

9.  High resolution whole brain diffusion imaging at 7T for the Human Connectome Project.

Authors:  A T Vu; E Auerbach; C Lenglet; S Moeller; S N Sotiropoulos; S Jbabdi; J Andersson; E Yacoub; K Ugurbil
Journal:  Neuroimage       Date:  2015-08-07       Impact factor: 6.556

10.  Advances in diffusion MRI acquisition and processing in the Human Connectome Project.

Authors:  Stamatios N Sotiropoulos; Saad Jbabdi; Junqian Xu; Jesper L Andersson; Steen Moeller; Edward J Auerbach; Matthew F Glasser; Moises Hernandez; Guillermo Sapiro; Mark Jenkinson; David A Feinberg; Essa Yacoub; Christophe Lenglet; David C Van Essen; Kamil Ugurbil; Timothy E J Behrens
Journal:  Neuroimage       Date:  2013-05-20       Impact factor: 6.556

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