Literature DB >> 19853611

The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB.

Yinyin Li1, Allyn J Schoeffler, James M Berger, Martha G Oakley.   

Abstract

MukB, a divergent structural maintenance of chromosomes (SMC) protein, is important for chromosomal segregation and condensation in gamma-proteobacteria. MukB and canonical SMC proteins share a characteristic five-domain structure. Globular N- and C-terminal domains interact to form an ATP-binding cassette-like ATPase or "head" domain, which is connected to a smaller dimerization or "hinge" domain by a long, antiparallel coiled coil. In addition to mediating dimerization, this hinge region has been implicated in both conformational flexibility and dynamic protein-DNA interactions. We report here the first crystallographic model of the MukB hinge domain. This model also contains approximately 20% of the coiled-coil domain, including an unusual coiled-coil deviation. These results will facilitate studies to clarify the roles of both the hinge and the coiled-coil domains in MukB function.

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Year:  2009        PMID: 19853611      PMCID: PMC4335309          DOI: 10.1016/j.jmb.2009.10.040

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  46 in total

1.  Condensin architecture and interaction with DNA: regulatory non-SMC subunits bind to the head of SMC heterodimer.

Authors:  Shige H Yoshimura; Kohji Hizume; Akiko Murakami; Takashi Sutani; Kunio Takeyasu; Mitsuhiro Yanagida
Journal:  Curr Biol       Date:  2002-03-19       Impact factor: 10.834

2.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

Review 3.  The structure and function of SMC and kleisin complexes.

Authors:  Kim Nasmyth; Christian H Haering
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

4.  Chromosome condensation in the absence of the non-SMC subunits of MukBEF.

Authors:  Qinhong Wang; Elena A Mordukhova; Andrea L Edwards; Valentin V Rybenkov
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

5.  ATP-induced shrinkage of DNA with MukB protein and the MukBEF complex of Escherichia coli.

Authors:  Ning Chen; Anatoly A Zinchenko; Yuko Yoshikawa; Sumiko Araki; Shun Adachi; Mitsuyoshi Yamazoe; Sota Hiraga; Kenichi Yoshikawa
Journal:  J Bacteriol       Date:  2008-03-07       Impact factor: 3.490

6.  Overproduction of three genes leads to camphor resistance and chromosome condensation in Escherichia coli.

Authors:  K H Hu; E Liu; K Dean; M Gingras; W DeGraff; N J Trun
Journal:  Genetics       Date:  1996-08       Impact factor: 4.562

Review 7.  SMC-mediated chromosome mechanics: a conserved scheme from bacteria to vertebrates?

Authors:  T Hirano
Journal:  Genes Dev       Date:  1999-01-01       Impact factor: 11.361

8.  Characterization of a prokaryotic SMC protein involved in chromosome partitioning.

Authors:  R A Britton; D C Lin; A D Grossman
Journal:  Genes Dev       Date:  1998-05-01       Impact factor: 11.361

9.  Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli.

Authors:  K Yamanaka; T Ogura; H Niki; S Hiraga
Journal:  Mol Gen Genet       Date:  1996-02-25

10.  The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge.

Authors:  T E Melby; C N Ciampaglio; G Briscoe; H P Erickson
Journal:  J Cell Biol       Date:  1998-09-21       Impact factor: 10.539

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  23 in total

1.  Mechanism of cohesin loading onto chromosomes: a conformational dynamics study.

Authors:  Ozge Kurkcuoglu; Paul A Bates
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

2.  Escherichia coli condensin MukB stimulates topoisomerase IV activity by a direct physical interaction.

Authors:  Yinyin Li; Nichole K Stewart; Anthony J Berger; Seychelle Vos; Allyn J Schoeffler; James M Berger; Brian T Chait; Martha G Oakley
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

Review 3.  Towards a Unified Model of SMC Complex Function.

Authors:  Markus Hassler; Indra A Shaltiel; Christian H Haering
Journal:  Curr Biol       Date:  2018-11-05       Impact factor: 10.834

4.  A new family of bacterial condensins.

Authors:  Zoya M Petrushenko; Weifeng She; Valentin V Rybenkov
Journal:  Mol Microbiol       Date:  2011-07-18       Impact factor: 3.501

5.  Structural basis for the MukB-topoisomerase IV interaction and its functional implications in vivo.

Authors:  Seychelle M Vos; Nichole K Stewart; Martha G Oakley; James M Berger
Journal:  EMBO J       Date:  2013-10-04       Impact factor: 11.598

6.  The MukB-ParC interaction affects the intramolecular, not intermolecular, activities of topoisomerase IV.

Authors:  Ryo Hayama; Soon Bahng; Mehmet E Karasu; Kenneth J Marians
Journal:  J Biol Chem       Date:  2013-01-24       Impact factor: 5.157

7.  The bacterial condensin MukB compacts DNA by sequestering supercoils and stabilizing topologically isolated loops.

Authors:  Rupesh Kumar; Małgorzata Grosbart; Pearl Nurse; Soon Bahng; Claire L Wyman; Kenneth J Marians
Journal:  J Biol Chem       Date:  2017-08-25       Impact factor: 5.157

Review 8.  A new twist in the coil: functions of the coiled-coil domain of structural maintenance of chromosome (SMC) proteins.

Authors:  Avi Matityahu; Itay Onn
Journal:  Curr Genet       Date:  2017-08-23       Impact factor: 3.886

Review 9.  MukBEF, a chromosomal organizer.

Authors:  Valentin V Rybenkov; Viridiana Herrera; Zoya M Petrushenko; Hang Zhao
Journal:  J Mol Microbiol Biotechnol       Date:  2015-02-17

10.  Structure and DNA binding activity of the mouse condensin hinge domain highlight common and diverse features of SMC proteins.

Authors:  Julia J Griese; Gregor Witte; Karl-Peter Hopfner
Journal:  Nucleic Acids Res       Date:  2010-02-05       Impact factor: 16.971

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