Literature DB >> 31055637

Unraveling quiescence-specific repressive chromatin domains.

Sarah G Swygert1, Toshio Tsukiyama2.   

Abstract

Quiescence is a highly conserved inactive life stage in which the cell reversibly exits the cell cycle in response to external cues. Quiescence is essential for diverse processes such as the maintenance of adult stem cell stores, stress resistance, and longevity, and its misregulation has been implicated in cancer. Although the non-cycling nature of quiescent cells has made obtaining sufficient quantities of quiescent cells for study difficult, the development of a Saccharomyces cerevisiae model of quiescence has recently enabled detailed investigation into mechanisms underlying the quiescent state. Like their metazoan counterparts, quiescent budding yeast exhibit widespread transcriptional silencing and dramatic chromatin condensation. We have recently found that the structural maintenance of chromosomes (SMC) complex condensin binds throughout the quiescent budding yeast genome and induces the formation of large chromatin loop domains. In the absence of condensin, quiescent cell chromatin is decondensed and transcription is de-repressed. Here, we briefly discuss our findings in the larger context of the genome organization field.

Entities:  

Keywords:  CIDs; Chromatin compaction; Cohesin; Condensin; Micro-C XL; Quiescence; TADs

Mesh:

Substances:

Year:  2019        PMID: 31055637     DOI: 10.1007/s00294-019-00985-9

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  62 in total

Review 1.  Transcriptional regulation in yeast during diauxic shift and stationary phase.

Authors:  Luciano Galdieri; Swati Mehrotra; Sean Yu; Ales Vancura
Journal:  OMICS       Date:  2010-09-23

2.  Cohesin complex promotes transcriptional termination between convergent genes in S. pombe.

Authors:  Monika Gullerova; Nick J Proudfoot
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

3.  Identification of cis-acting sites for condensin loading onto budding yeast chromosomes.

Authors:  Claudio D'Ambrosio; Christine Katrin Schmidt; Yuki Katou; Gavin Kelly; Takehiko Itoh; Katsuhiko Shirahige; Frank Uhlmann
Journal:  Genes Dev       Date:  2008-08-15       Impact factor: 11.361

Review 4.  Stress-controlled transcription factors, stress-induced genes and stress tolerance in budding yeast.

Authors:  F Estruch
Journal:  FEMS Microbiol Rev       Date:  2000-10       Impact factor: 16.408

5.  Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes.

Authors:  Rebecca A Haeusler; Matthew Pratt-Hyatt; Paul D Good; Theresa A Gipson; David R Engelke
Journal:  Genes Dev       Date:  2008-08-15       Impact factor: 11.361

Review 6.  "Sleeping beauty": quiescence in Saccharomyces cerevisiae.

Authors:  Joseph V Gray; Gregory A Petsko; Gerald C Johnston; Dagmar Ringe; Richard A Singer; Margaret Werner-Washburne
Journal:  Microbiol Mol Biol Rev       Date:  2004-06       Impact factor: 11.056

7.  Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress.

Authors:  Anthony D Aragon; Gabriel A Quiñones; Edward V Thomas; Sushmita Roy; Margaret Werner-Washburne
Journal:  Genome Biol       Date:  2006-02-08       Impact factor: 13.583

8.  Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures.

Authors:  Chris Allen; Sabrina Büttner; Anthony D Aragon; Jason A Thomas; Osorio Meirelles; Jason E Jaetao; Don Benn; Stephanie W Ruby; Marten Veenhuis; Frank Madeo; Margaret Werner-Washburne
Journal:  J Cell Biol       Date:  2006-07-03       Impact factor: 10.539

9.  Cohesin relocation from sites of chromosomal loading to places of convergent transcription.

Authors:  Armelle Lengronne; Yuki Katou; Saori Mori; Shihori Yokobayashi; Gavin P Kelly; Takehiko Itoh; Yoshinori Watanabe; Katsuhiko Shirahige; Frank Uhlmann
Journal:  Nature       Date:  2004-06-30       Impact factor: 49.962

10.  Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae.

Authors:  Earl F Glynn; Paul C Megee; Hong-Guo Yu; Cathy Mistrot; Elcin Unal; Douglas E Koshland; Joseph L DeRisi; Jennifer L Gerton
Journal:  PLoS Biol       Date:  2004-07-27       Impact factor: 8.029

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  5 in total

Review 1.  Cellular quiescence in budding yeast.

Authors:  Siyu Sun; David Gresham
Journal:  Yeast       Date:  2021-01-25       Impact factor: 3.239

2.  Local chromatin fiber folding represses transcription and loop extrusion in quiescent cells.

Authors:  Sarah G Swygert; Dejun Lin; Stephanie Portillo-Ledesma; Po-Yen Lin; Dakota R Hunt; Cheng-Fu Kao; Tamar Schlick; William S Noble; Toshio Tsukiyama
Journal:  Elife       Date:  2021-11-04       Impact factor: 8.140

3.  Distinct structural groups of histone H3 and H4 residues have divergent effects on chronological lifespan in Saccharomyces cerevisiae.

Authors:  Mzwanele Ngubo; Jessica Laura Reid; Hugh-George Patterton
Journal:  PLoS One       Date:  2022-05-27       Impact factor: 3.752

4.  Inhibition of transcription leads to rewiring of locus-specific chromatin proteomes.

Authors:  Deepani W Poramba-Liyanage; Tessy Korthout; Christine E Cucinotta; Ila van Kruijsbergen; Tibor van Welsem; Dris El Atmioui; Huib Ovaa; Toshio Tsukiyama; Fred van Leeuwen
Journal:  Genome Res       Date:  2020-03-18       Impact factor: 9.043

Review 5.  Explore a novel function of human condensins in cellular senescence.

Authors:  Hongzhen Wang; Xin Liu; Guiying Li
Journal:  Cell Biosci       Date:  2020-12-29       Impact factor: 7.133

  5 in total

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