Literature DB >> 28811321

Identification of drivers for the metamorphic transition of HIV-1 reverse transcriptase.

Xunhai Zheng1, Geoffrey A Mueller1, Kyungmin Kim1, Lalith Perera1, Eugene F DeRose1, Robert E London2.   

Abstract

Recent structural characterizations of the p51 and p66 monomers have established an important starting point for understanding the maturation pathway of the human immunodeficiency virus (HIV)-1 reverse transcriptase p66/p51 heterodimer. This process requires a metamorphic transition of the polymerase domain leading to formation of a p66/p66' homodimer that exists as a structural heterodimer. To better understand the drivers for this metamorphic transition, we have performed NMR studies of 15N-labeled RT216 - a construct that includes the fingers and most of the palm domains. These studies are consistent with the conclusion that the p66 monomer exists as a spring-loaded complex. Initial dissociation of the fingers/palm : connection complex allows the fingers/palm to adopt an alternate, more stable structure, reducing the rate of reassociation and facilitating subsequent maturation steps. One of the drivers for an initial extension of the fingers/palm domains is identified as a straightening of helix E relative to its conformation in the monomer by eliminating a bend of ∼50° near residue Phe160. NMR and circular dichroism data also are consistent with the conclusion that a hydrophobic surface of palm domain that becomes exposed after the initial dissociation, as well as the intrinsic conformational preferences of the palm domain C-terminal segment, facilitates the formation of the β-sheet structure that is unique to the active polymerase subunit. Spectral comparisons based on 15N-labeled constructs are all consistent with previous structural conclusions based on studies of 13C-methyl-labeled constructs.
© 2017 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  HIV-1 reverse transcriptase; NMR spectroscopy; metamorphic; structural maturation

Mesh:

Substances:

Year:  2017        PMID: 28811321      PMCID: PMC5614878          DOI: 10.1042/BCJ20170480

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  44 in total

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6.  The p66 immature precursor of HIV-1 reverse transcriptase.

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7.  Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA.

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8.  Metal and ligand binding to the HIV-RNase H active site are remotely monitored by Ile556.

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9.  Selective unfolding of one Ribonuclease H domain of HIV reverse transcriptase is linked to homodimer formation.

Authors:  Xunhai Zheng; Lars C Pedersen; Scott A Gabel; Geoffrey A Mueller; Matthew J Cuneo; Eugene F DeRose; Juno M Krahn; Robert E London
Journal:  Nucleic Acids Res       Date:  2014-02-25       Impact factor: 16.971

10.  PDB2CD: a web-based application for the generation of circular dichroism spectra from protein atomic coordinates.

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  6 in total

Review 1.  HIV-1 Reverse Transcriptase: A Metamorphic Protein with Three Stable States.

Authors:  Robert E London
Journal:  Structure       Date:  2019-01-10       Impact factor: 5.006

2.  Conformational Changes in HIV-1 Reverse Transcriptase that Facilitate Its Maturation.

Authors:  Ryan L Slack; Tatiana V Ilina; Zhaoyong Xi; Nicholas S Giacobbi; Gota Kawai; Michael A Parniak; Stefan G Sarafianos; Nicolas Sluis Cremer; Rieko Ishima
Journal:  Structure       Date:  2019-08-27       Impact factor: 5.006

3.  PDBMD2CD: providing predicted protein circular dichroism spectra from multiple molecular dynamics-generated protein structures.

Authors:  Elliot D Drew; Robert W Janes
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

4.  Structure of the Hydrophobic Core Determines the 3D Protein Structure-Verification by Single Mutation Proteins.

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Journal:  Biomolecules       Date:  2020-05-14

Review 5.  Large Multidomain Protein NMR: HIV-1 Reverse Transcriptase Precursor in Solution.

Authors:  Tatiana V Ilina; Zhaoyong Xi; Teresa Brosenitsch; Nicolas Sluis-Cremer; Rieko Ishima
Journal:  Int J Mol Sci       Date:  2020-12-15       Impact factor: 5.923

Review 6.  Tools and methods for circular dichroism spectroscopy of proteins: a tutorial review.

Authors:  A J Miles; Robert W Janes; B A Wallace
Journal:  Chem Soc Rev       Date:  2021-06-15       Impact factor: 54.564

  6 in total

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