Literature DB >> 24771554

The p66 immature precursor of HIV-1 reverse transcriptase.

Naima G Sharaf1, Eric Poliner, Ryan L Slack, Martin T Christen, In-Ja L Byeon, Michael A Parniak, Angela M Gronenborn, Rieko Ishima.   

Abstract

In contrast to the wealth of structural data available for the mature p66/p51 heterodimeric human immunodeficiency virus type 1 reverse transcriptase (RT), the structure of the homodimeric p66 precursor remains unknown. In all X-ray structures of mature RT, free or complexed, the processing site in the p66 subunit, for generating the p51 subunit, is sequestered into a β-strand within the folded ribonuclease H (RNH) domain and is not readily accessible to proteolysis, rendering it difficult to propose a simple and straightforward mechanism of the maturation step. Here, we investigated, by solution NMR, the conformation of the RT p66 homodimer. Our data demonstrate that the RNH and Thumb domains in the p66 homodimer are folded and possess conformations very similar to those in mature RT. This finding suggests that maturation models which invoke a complete or predominantly unfolded RNH domain are unlikely. The present study lays the foundation for further in-depth mechanistic investigations at the atomic level.
© 2014 Wiley Periodicals, Inc.

Entities:  

Keywords:  NMR; dynamics; enzyme; maturation; protein; proteolysis; structure

Mesh:

Substances:

Year:  2014        PMID: 24771554      PMCID: PMC4441793          DOI: 10.1002/prot.24594

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  59 in total

Review 1.  Impact of transverse relaxation optimized spectroscopy (TROSY) on NMR as a technique in structural biology.

Authors:  K Pervushin
Journal:  Q Rev Biophys       Date:  2000-05       Impact factor: 5.318

2.  Factors affecting the dimerization of the p66 form of HIV-1 reverse transcriptase.

Authors:  J F Cabodevilla; L Odriozola; E Santiago; J J Martínez-Irujo
Journal:  Eur J Biochem       Date:  2001-03

Review 3.  Reverse transcription of retroviruses and LTR retrotransposons.

Authors:  M Wilhelm; F X Wilhelm
Journal:  Cell Mol Life Sci       Date:  2001-08       Impact factor: 9.261

4.  Solution structure of the RNase H domain of the HIV-1 reverse transcriptase in the presence of magnesium.

Authors:  Koteppa Pari; Geoffrey A Mueller; Eugene F DeRose; Thomas W Kirby; Robert E London
Journal:  Biochemistry       Date:  2003-01-28       Impact factor: 3.162

5.  Structure-activity relationships in HIV-1 reverse transcriptase revealed by radiation target analysis.

Authors:  Nicolas Sluis-Cremer; Ellis Kempner; Michael A Parniak
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

6.  Structural requirements for enzymatic activities of foamy virus protease-reverse transcriptase.

Authors:  Anna Schneider; Daniel Peter; Jessica Schmitt; Berit Leo; Franziska Richter; Paul Rösch; Birgitta M Wöhrl; Maximilian J Hartl
Journal:  Proteins       Date:  2013-10-17

7.  Human immunodeficiency virus type 1 reverse transcriptase dimer destabilization by 1-[Spiro[4"-amino-2",2" -dioxo-1",2" -oxathiole-5",3'-[2', 5'-bis-O-(tert-butyldimethylsilyl)-beta-D-ribofuranosyl]]]-3-ethylthy mine.

Authors:  N Sluis-Cremer; G I Dmitrienko; J Balzarini; M J Camarasa; M A Parniak
Journal:  Biochemistry       Date:  2000-02-15       Impact factor: 3.162

Review 8.  Retroviral reverse transcriptases.

Authors:  Alon Herschhorn; Amnon Hizi
Journal:  Cell Mol Life Sci       Date:  2010-04-01       Impact factor: 9.261

9.  Structural basis of the allosteric inhibitor interaction on the HIV-1 reverse transcriptase RNase H domain.

Authors:  Martin T Christen; Lakshmi Menon; Nataliya S Myshakina; Jinwoo Ahn; Michael A Parniak; Rieko Ishima
Journal:  Chem Biol Drug Des       Date:  2012-08-31       Impact factor: 2.817

10.  Selective unfolding of one Ribonuclease H domain of HIV reverse transcriptase is linked to homodimer formation.

Authors:  Xunhai Zheng; Lars C Pedersen; Scott A Gabel; Geoffrey A Mueller; Matthew J Cuneo; Eugene F DeRose; Juno M Krahn; Robert E London
Journal:  Nucleic Acids Res       Date:  2014-02-25       Impact factor: 16.971

View more
  22 in total

1.  Conformational Plasticity of the NNRTI-Binding Pocket in HIV-1 Reverse Transcriptase: A Fluorine Nuclear Magnetic Resonance Study.

Authors:  Naima G Sharaf; Rieko Ishima; Angela M Gronenborn
Journal:  Biochemistry       Date:  2016-07-11       Impact factor: 3.162

Review 2.  HIV-1 Reverse Transcriptase: A Metamorphic Protein with Three Stable States.

Authors:  Robert E London
Journal:  Structure       Date:  2019-01-10       Impact factor: 5.006

3.  Structural integrity of the ribonuclease H domain in HIV-1 reverse transcriptase.

Authors:  Ryan L Slack; Justin Spiriti; Jinwoo Ahn; Michael A Parniak; Daniel M Zuckerman; Rieko Ishima
Journal:  Proteins       Date:  2015-07-01

4.  Entire-Dataset Analysis of NMR Fast-Exchange Titration Spectra: A Mg2+ Titration Analysis for HIV-1 Ribonuclease H Domain.

Authors:  Ichhuk Karki; Martin T Christen; Justin Spiriti; Ryan L Slack; Masayuki Oda; Kenji Kanaori; Daniel M Zuckerman; Rieko Ishima
Journal:  J Phys Chem B       Date:  2016-12-05       Impact factor: 2.991

5.  Conformational Changes in HIV-1 Reverse Transcriptase that Facilitate Its Maturation.

Authors:  Ryan L Slack; Tatiana V Ilina; Zhaoyong Xi; Nicholas S Giacobbi; Gota Kawai; Michael A Parniak; Stefan G Sarafianos; Nicolas Sluis Cremer; Rieko Ishima
Journal:  Structure       Date:  2019-08-27       Impact factor: 5.006

6.  NMR structure of the HIV-1 reverse transcriptase thumb subdomain.

Authors:  Naima G Sharaf; Andrew E Brereton; In-Ja L Byeon; P Andrew Karplus; Angela M Gronenborn
Journal:  J Biomol NMR       Date:  2016-11-17       Impact factor: 2.835

7.  Effect of tRNA on the Maturation of HIV-1 Reverse Transcriptase.

Authors:  Tatiana V Ilina; Ryan L Slack; John H Elder; Stefan G Sarafianos; Michael A Parniak; Rieko Ishima
Journal:  J Mol Biol       Date:  2018-05-08       Impact factor: 5.469

8.  The HIV-1 p66 homodimeric RT exhibits different conformations in the binding-competent and -incompetent NNRTI site.

Authors:  Naima G Sharaf; Zhaoyong Xi; Rieko Ishima; Angela M Gronenborn
Journal:  Proteins       Date:  2017-09-26

9.  Quantitative Resolution of Monomer-Dimer Populations by Inversion Modulated DEER EPR Spectroscopy.

Authors:  Thomas Schmidt; Rodolfo Ghirlando; James Baber; G Marius Clore
Journal:  Chemphyschem       Date:  2016-08-02       Impact factor: 3.102

10.  Unfolding the HIV-1 reverse transcriptase RNase H domain--how to lose a molecular tug-of-war.

Authors:  Xunhai Zheng; Lars C Pedersen; Scott A Gabel; Geoffrey A Mueller; Eugene F DeRose; Robert E London
Journal:  Nucleic Acids Res       Date:  2016-01-14       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.