Literature DB >> 30639227

HIV-1 Reverse Transcriptase: A Metamorphic Protein with Three Stable States.

Robert E London1.   

Abstract

There has been a steadily increasing appreciation of the fact that the relationship between protein sequence and structure is often sufficiently ambiguous to allow a single sequence to adopt alternative, stable folds. Living organisms have been able to utilize such metamorphic proteins in remarkable and unanticipated ways. HIV-1 reverse transcriptase is among the earliest such proteins identified and remains a unique example in which a functional heterodimer contains two, alternatively folded polymerase domains. Structural characterization of the p66 precursor protein combined with NMR spectroscopic and molecular modeling studies have provided insights into the factors underlying the metamorphic transition and the subunit-specific programmed unfolding step required to expose the protease cleavage site within the ribonuclease H domain, supporting the conversion of the p66/p66' precursor into the mature p66/p51 heterodimer. Published by Elsevier Ltd.

Entities:  

Keywords:  HIV-1 reverse transcriptase; metamorphic protein; metamorphic transition; programmed unfolding; subunit-specific RH-domain unfolding

Mesh:

Substances:

Year:  2019        PMID: 30639227      PMCID: PMC6686890          DOI: 10.1016/j.str.2018.11.011

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  44 in total

1.  Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase.

Authors:  J F Davies; Z Hostomska; Z Hostomsky; S R Jordan; D A Matthews
Journal:  Science       Date:  1991-04-05       Impact factor: 47.728

2.  Protein-protein interactions of HIV-1 reverse transcriptase: implication of central and C-terminal regions in subunit binding.

Authors:  S P Becerra; A Kumar; M S Lewis; S G Widen; J Abbotts; E M Karawya; S H Hughes; J Shiloach; S H Wilson; M S Lewis
Journal:  Biochemistry       Date:  1991-12-17       Impact factor: 3.162

Review 3.  Structural gymnastics of multifunctional metamorphic proteins.

Authors:  Sophia C Goodchild; Paul M G Curmi; Louise J Brown
Journal:  Biophys Rev       Date:  2011-07-28

4.  Structure of a dihydroxycoumarin active-site inhibitor in complex with the RNase H domain of HIV-1 reverse transcriptase and structure-activity analysis of inhibitor analogs.

Authors:  Daniel M Himmel; Nataliya S Myshakina; Tatiana Ilina; Alexander Van Ry; William C Ho; Michael A Parniak; Eddy Arnold
Journal:  J Mol Biol       Date:  2014-05-17       Impact factor: 5.469

5.  Homodimerization of the p51 subunit of HIV-1 reverse transcriptase.

Authors:  Xunhai Zheng; Geoffrey A Mueller; Matthew J Cuneo; Eugene F Derose; Robert E London
Journal:  Biochemistry       Date:  2010-04-06       Impact factor: 3.162

6.  Effect of tRNA on the Maturation of HIV-1 Reverse Transcriptase.

Authors:  Tatiana V Ilina; Ryan L Slack; John H Elder; Stefan G Sarafianos; Michael A Parniak; Rieko Ishima
Journal:  J Mol Biol       Date:  2018-05-08       Impact factor: 5.469

7.  Structure of HIV-1 reverse transcriptase with the inhibitor beta-Thujaplicinol bound at the RNase H active site.

Authors:  Daniel M Himmel; Karen A Maegley; Tom A Pauly; Joseph D Bauman; Kalyan Das; Chhaya Dharia; Arthur D Clark; Kevin Ryan; Michael J Hickey; Robert A Love; Stephen H Hughes; Simon Bergqvist; Eddy Arnold
Journal:  Structure       Date:  2009-12-09       Impact factor: 5.006

8.  Structure and functional implications of the polymerase active site region in a complex of HIV-1 RT with a double-stranded DNA template-primer and an antibody Fab fragment at 2.8 A resolution.

Authors:  J Ding; K Das; Y Hsiou; S G Sarafianos; A D Clark; A Jacobo-Molina; C Tantillo; S H Hughes; E Arnold
Journal:  J Mol Biol       Date:  1998-12-11       Impact factor: 5.469

9.  Chapter 3. Lymphotactin structural dynamics.

Authors:  Brian F Volkman; Tina Y Liu; Francis C Peterson
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

10.  Selective unfolding of one Ribonuclease H domain of HIV reverse transcriptase is linked to homodimer formation.

Authors:  Xunhai Zheng; Lars C Pedersen; Scott A Gabel; Geoffrey A Mueller; Matthew J Cuneo; Eugene F DeRose; Juno M Krahn; Robert E London
Journal:  Nucleic Acids Res       Date:  2014-02-25       Impact factor: 16.971

View more
  11 in total

1.  Small Conformational Changes Underlie Evolution of Resistance to NNRTI in HIV Reverse Transcriptase.

Authors:  Ashutosh Srivastava; Varun Birari; Somdatta Sinha
Journal:  Biophys J       Date:  2020-04-16       Impact factor: 4.033

Review 2.  Evolving understanding of HIV-1 reverse transcriptase structure, function, inhibition, and resistance.

Authors:  Francesc Xavier Ruiz; Eddy Arnold
Journal:  Curr Opin Struct Biol       Date:  2020-01-11       Impact factor: 6.809

3.  Dimer dissociation is a key energetic event in the fold-switch pathway of KaiB.

Authors:  Maira Rivera; Pablo Galaz-Davison; Ignacio Retamal-Farfán; Elizabeth A Komives; César A Ramírez-Sarmiento
Journal:  Biophys J       Date:  2022-02-11       Impact factor: 4.033

4.  Novel 2-(Diphenylmethylidene) Malonic Acid Derivatives as Anti-HIV Agents: Molecular Modeling, Synthesis and Biological Evaluation.

Authors:  Mehrnaz Lotfaliei; Elham Rezaee; Zahra Hajimahdi; Mohammad Mahboubi Rabbani; Rezvan Zabihollahi; Mohammad Reza Aghasadeghi; Sayyed Abbas Tabatabai
Journal:  Iran J Pharm Res       Date:  2021-12-14       Impact factor: 1.962

Review 5.  Insights into HIV-1 Reverse Transcriptase (RT) Inhibition and Drug Resistance from Thirty Years of Structural Studies.

Authors:  Abhimanyu K Singh; Kalyan Das
Journal:  Viruses       Date:  2022-05-11       Impact factor: 5.818

6.  Volume and compressibility differences between protein conformations revealed by high-pressure NMR.

Authors:  Xingjian Xu; Donald Gagné; James M Aramini; Kevin H Gardner
Journal:  Biophys J       Date:  2021-01-30       Impact factor: 4.033

7.  Structure of the Hydrophobic Core Determines the 3D Protein Structure-Verification by Single Mutation Proteins.

Authors:  Mateusz Banach; Piotr Fabian; Katarzyna Stapor; Leszek Konieczny; And Irena Roterman
Journal:  Biomolecules       Date:  2020-05-14

8.  Metamorphic proteins: the Janus proteins of structural biology.

Authors:  Kulkarni Madhurima; Bodhisatwa Nandi; Ashok Sekhar
Journal:  Open Biol       Date:  2021-04-21       Impact factor: 6.411

Review 9.  Large Multidomain Protein NMR: HIV-1 Reverse Transcriptase Precursor in Solution.

Authors:  Tatiana V Ilina; Zhaoyong Xi; Teresa Brosenitsch; Nicolas Sluis-Cremer; Rieko Ishima
Journal:  Int J Mol Sci       Date:  2020-12-15       Impact factor: 5.923

Review 10.  Moonlighting Proteins in the Fuzzy Logic of Cellular Metabolism.

Authors:  Haipeng Liu; Constance J Jeffery
Journal:  Molecules       Date:  2020-07-29       Impact factor: 4.411

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.