Literature DB >> 31471129

Conformational Changes in HIV-1 Reverse Transcriptase that Facilitate Its Maturation.

Ryan L Slack1, Tatiana V Ilina1, Zhaoyong Xi1, Nicholas S Giacobbi2, Gota Kawai3, Michael A Parniak4, Stefan G Sarafianos5, Nicolas Sluis Cremer6, Rieko Ishima7.   

Abstract

HIV-1 reverse transcriptase (RT) is translated as part of the Gag-Pol polyprotein that is proteolytically processed by HIV-1 protease (PR) to finally become a mature heterodimer, composed of a p66 and a p66-derived 51-kDa subunit, p51. Our previous work suggested that tRNALys3 binding to p66/p66 introduces conformational changes in the ribonuclease (RNH) domain of RT that facilitate efficient cleavage of p66 to p51 by PR. In this study, we characterized the conformational changes in the RNH domain of p66/p66 imparted by tRNALys3 using NMR. Moreover, the importance of tRNALys3 in RT maturation was confirmed in cellulo by modulating the levels of Lys-tRNA synthetase, which affects recruitment of tRNALys3 to the virus. We also employed nonnucleoside RT inhibitors, to modulate the p66 dimer-monomer equilibrium and monitor the resulting structural changes. Taken together, our data provide unique insights into the conformational changes in p66/p66 that drive PR cleavage.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  HIV-1; NMR; maturation; reverse transcriptase; structure

Mesh:

Substances:

Year:  2019        PMID: 31471129      PMCID: PMC6774901          DOI: 10.1016/j.str.2019.08.004

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  69 in total

1.  Effects of mutations in Pr160gag-pol upon tRNA(Lys3) and Pr160gag-plo incorporation into HIV-1.

Authors:  J Mak; A Khorchid; Q Cao; Y Huang; I Lowy; M A Parniak; V R Prasad; M A Wainberg; L Kleiman
Journal:  J Mol Biol       Date:  1997-01-31       Impact factor: 5.469

2.  Comparison of human immunodeficiency virus type 1 Pr55(Gag) and Pr160(Gag-pol) processing intermediates that accumulate in primary and transformed cells treated with peptidic and nonpeptidic protease inhibitors.

Authors:  R R Speck; C Flexner; C J Tian; X F Yu
Journal:  Antimicrob Agents Chemother       Date:  2000-05       Impact factor: 5.191

3.  Crystal structures of HIV-1 reverse transcriptase with etravirine (TMC125) and rilpivirine (TMC278): implications for drug design.

Authors:  Eric B Lansdon; Katherine M Brendza; Magdeleine Hung; Ruth Wang; Susmith Mukund; Debi Jin; Gabriel Birkus; Nilima Kutty; Xiaohong Liu
Journal:  J Med Chem       Date:  2010-05-27       Impact factor: 7.446

4.  Induced maturation of human immunodeficiency virus.

Authors:  Simone Mattei; Maria Anders; Jan Konvalinka; Hans-Georg Kräusslich; John A G Briggs; Barbara Müller
Journal:  J Virol       Date:  2014-09-17       Impact factor: 5.103

5.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

6.  The HIV-1 p66 homodimeric RT exhibits different conformations in the binding-competent and -incompetent NNRTI site.

Authors:  Naima G Sharaf; Zhaoyong Xi; Rieko Ishima; Angela M Gronenborn
Journal:  Proteins       Date:  2017-09-26

7.  Interaction of the reverse transcriptase of human immunodeficiency virus type 1 with DNA.

Authors:  M Bakhanashvili; A Hizi
Journal:  Biochemistry       Date:  1994-10-11       Impact factor: 3.162

8.  The CCPN data model for NMR spectroscopy: development of a software pipeline.

Authors:  Wim F Vranken; Wayne Boucher; Tim J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John L Markley; John Ionides; Ernest D Laue
Journal:  Proteins       Date:  2005-06-01

9.  Incorporation of lysyl-tRNA synthetase into human immunodeficiency virus type 1.

Authors:  S Cen; A Khorchid; H Javanbakht; J Gabor; T Stello; K Shiba; K Musier-Forsyth; L Kleiman
Journal:  J Virol       Date:  2001-06       Impact factor: 5.103

10.  Noncanonical roles of membranous lysyl-tRNA synthetase in transducing cell-substrate signaling for invasive dissemination of colon cancer spheroids in 3D collagen I gels.

Authors:  Seo Hee Nam; Doyeun Kim; Mi-Sook Lee; Doohyung Lee; Tae Kyoung Kwak; Minkyung Kang; Jihye Ryu; Hye-Jin Kim; Haeng Eun Song; Jungeun Choi; Gyu-Ho Lee; Sang-Yeob Kim; Song Hwa Park; Dae Gyu Kim; Nam Hoon Kwon; Tai Young Kim; Jean Paul Thiery; Sunghoon Kim; Jung Weon Lee
Journal:  Oncotarget       Date:  2015-08-28
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  6 in total

Review 1.  Evolving understanding of HIV-1 reverse transcriptase structure, function, inhibition, and resistance.

Authors:  Francesc Xavier Ruiz; Eddy Arnold
Journal:  Curr Opin Struct Biol       Date:  2020-01-11       Impact factor: 6.809

2.  Probing the Interaction between HIV-1 Protease and the Homodimeric p66/p66' Reverse Transcriptase Precursor by Double Electron-Electron Resonance EPR Spectroscopy.

Authors:  Thomas Schmidt; John M Louis; G Marius Clore
Journal:  Chembiochem       Date:  2020-07-14       Impact factor: 3.461

3.  Effect of Lysyl-tRNA Synthetase on the Maturation of HIV-1 Reverse Transcriptase.

Authors:  Tatiana V Ilina; Ryan L Slack; Michel Guerrero; Rieko Ishima
Journal:  ACS Omega       Date:  2020-06-30

Review 4.  Large Multidomain Protein NMR: HIV-1 Reverse Transcriptase Precursor in Solution.

Authors:  Tatiana V Ilina; Zhaoyong Xi; Teresa Brosenitsch; Nicolas Sluis-Cremer; Rieko Ishima
Journal:  Int J Mol Sci       Date:  2020-12-15       Impact factor: 5.923

5.  Human endogenous retrovirus-K (HERV-K) reverse transcriptase (RT) structure and biochemistry reveals remarkable similarities to HIV-1 RT and opportunities for HERV-K-specific inhibition.

Authors:  Eric T Baldwin; Matthias Götte; Egor P Tchesnokov; Eddy Arnold; Margit Hagel; Charles Nichols; Pam Dossang; Marieke Lamers; Paul Wan; Stefan Steinbacher; Donna L Romero
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-30       Impact factor: 12.779

Review 6.  Interplay between Host tRNAs and HIV-1: A Structural Perspective.

Authors:  Jinwei Zhang
Journal:  Viruses       Date:  2021-09-13       Impact factor: 5.048

  6 in total

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