Literature DB >> 28302851

Structural basis of the day-night transition in a bacterial circadian clock.

Roger Tseng1, Nicolette F Goularte2, Archana Chavan3, Jansen Luu2, Susan E Cohen4, Yong-Gang Chang3, Joel Heisler5, Sheng Li6, Alicia K Michael2, Sarvind Tripathi2, Susan S Golden4,7, Andy LiWang8,3,4,5,9, Carrie L Partch10,4.   

Abstract

Circadian clocks are ubiquitous timing systems that induce rhythms of biological activities in synchrony with night and day. In cyanobacteria, timing is generated by a posttranslational clock consisting of KaiA, KaiB, and KaiC proteins and a set of output signaling proteins, SasA and CikA, which transduce this rhythm to control gene expression. Here, we describe crystal and nuclear magnetic resonance structures of KaiB-KaiC,KaiA-KaiB-KaiC, and CikA-KaiB complexes. They reveal how the metamorphic properties of KaiB, a protein that adopts two distinct folds, and the post-adenosine triphosphate hydrolysis state of KaiC create a hub around which nighttime signaling events revolve, including inactivation of KaiA and reciprocal regulation of the mutually antagonistic signaling proteins, SasA and CikA.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 28302851      PMCID: PMC5441561          DOI: 10.1126/science.aag2516

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  60 in total

1.  A kaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria.

Authors:  H Iwasaki; S B Williams; Y Kitayama; M Ishiura; S S Golden; T Kondo
Journal:  Cell       Date:  2000-04-14       Impact factor: 41.582

2.  Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria.

Authors:  T Nishiwaki; H Iwasaki; M Ishiura; T Kondo
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

3.  Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism.

Authors:  Stanly B Williams; Ioannis Vakonakis; Susan S Golden; Andy C LiWang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-15       Impact factor: 11.205

4.  Circadian autodephosphorylation of cyanobacterial clock protein KaiC occurs via formation of ATP as intermediate.

Authors:  Taeko Nishiwaki; Takao Kondo
Journal:  J Biol Chem       Date:  2012-04-09       Impact factor: 5.157

Review 5.  Circadian rhythms from multiple oscillators: lessons from diverse organisms.

Authors:  Deborah Bell-Pedersen; Vincent M Cassone; David J Earnest; Susan S Golden; Paul E Hardin; Terry L Thomas; Mark J Zoran
Journal:  Nat Rev Genet       Date:  2005-07       Impact factor: 53.242

6.  A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria.

Authors:  Taeko Nishiwaki; Yoshinori Satomi; Yohko Kitayama; Kazuki Terauchi; Reiko Kiyohara; Toshifumi Takao; Takao Kondo
Journal:  EMBO J       Date:  2007-08-23       Impact factor: 11.598

7.  Oscillations in supercoiling drive circadian gene expression in cyanobacteria.

Authors:  Vikram Vijayan; Rick Zuzow; Erin K O'Shea
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

8.  Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria.

Authors:  M Ishiura; S Kutsuna; S Aoki; H Iwasaki; C R Andersson; A Tanabe; S S Golden; C H Johnson; T Kondo
Journal:  Science       Date:  1998-09-04       Impact factor: 47.728

9.  Two antagonistic clock-regulated histidine kinases time the activation of circadian gene expression.

Authors:  Andrian Gutu; Erin K O'Shea
Journal:  Mol Cell       Date:  2013-03-28       Impact factor: 17.970

Review 10.  Circadian physiology of metabolism.

Authors:  Satchidananda Panda
Journal:  Science       Date:  2016-11-25       Impact factor: 47.728

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  56 in total

1.  CikA, an Input Pathway Component, Senses the Oxidized Quinone Signal to Generate Phase Delays in the Cyanobacterial Circadian Clock.

Authors:  Pyonghwa Kim; Brianna Porr; Tetsuya Mori; Yong-Sung Kim; Carl H Johnson; Casey O Diekman; Yong-Ick Kim
Journal:  J Biol Rhythms       Date:  2020-01-27       Impact factor: 3.182

Review 2.  Circadian oscillator proteins across the kingdoms of life: structural aspects.

Authors:  Reena Saini; Mariusz Jaskolski; Seth J Davis
Journal:  BMC Biol       Date:  2019-02-18       Impact factor: 7.431

3.  The thermodynamic uncertainty relation in biochemical oscillations.

Authors:  Robert Marsland; Wenping Cui; Jordan M Horowitz
Journal:  J R Soc Interface       Date:  2019-05-31       Impact factor: 4.118

Review 4.  Gut microbiota as a transducer of dietary cues to regulate host circadian rhythms and metabolism.

Authors:  Hyoann Choi; Mrinalini C Rao; Eugene B Chang
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2021-05-17       Impact factor: 46.802

5.  Structural biology: The tick-tock of circadian clocks.

Authors:  Ashley York
Journal:  Nat Rev Microbiol       Date:  2017-04-03       Impact factor: 60.633

6.  Molecular dynamics simulations of nucleotide release from the circadian clock protein KaiC reveal atomic-resolution functional insights.

Authors:  Lu Hong; Bodhi P Vani; Erik H Thiede; Michael J Rust; Aaron R Dinner
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-15       Impact factor: 11.205

7.  Genome-wide fitness assessment during diurnal growth reveals an expanded role of the cyanobacterial circadian clock protein KaiA.

Authors:  David G Welkie; Benjamin E Rubin; Yong-Gang Chang; Spencer Diamond; Scott A Rifkin; Andy LiWang; Susan S Golden
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-10       Impact factor: 11.205

Review 8.  HIV-1 Reverse Transcriptase: A Metamorphic Protein with Three Stable States.

Authors:  Robert E London
Journal:  Structure       Date:  2019-01-10       Impact factor: 5.006

9.  Roles for ClpXP in regulating the circadian clock in Synechococcus elongatus.

Authors:  Susan E Cohen; Briana M McKnight; Susan S Golden
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-30       Impact factor: 11.205

Review 10.  Structural metamorphism and polymorphism in proteins on the brink of thermodynamic stability.

Authors:  Prakash Kulkarni; Tsega L Solomon; Yanan He; Yihong Chen; Philip N Bryan; John Orban
Journal:  Protein Sci       Date:  2018-09-24       Impact factor: 6.725

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