Literature DB >> 25999507

Virology. A virus that infects a hyperthermophile encapsidates A-form DNA.

Frank DiMaio1, Xiong Yu2, Elena Rensen3, Mart Krupovic3, David Prangishvili4, Edward H Egelman5.   

Abstract

Extremophiles, microorganisms thriving in extreme environmental conditions, must have proteins and nucleic acids that are stable at extremes of temperature and pH. The nonenveloped, rod-shaped virus SIRV2 (Sulfolobus islandicus rod-shaped virus 2) infects the hyperthermophilic acidophile Sulfolobus islandicus, which lives at 80°C and pH 3. We have used cryo-electron microscopy to generate a three-dimensional reconstruction of the SIRV2 virion at ~4 angstrom resolution, which revealed a previously unknown form of virion organization. Although almost half of the capsid protein is unstructured in solution, this unstructured region folds in the virion into a single extended α helix that wraps around the DNA. The DNA is entirely in the A-form, which suggests a common mechanism with bacterial spores for protecting DNA in the most adverse environments.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 25999507      PMCID: PMC5512286          DOI: 10.1126/science.aaa4181

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  36 in total

1.  A novel virus family, the Rudiviridae: Structure, virus-host interactions and genome variability of the sulfolobus viruses SIRV1 and SIRV2.

Authors:  D Prangishvili; H P Arnold; D Götz; U Ziese; I Holz; J K Kristjansson; W Zillig
Journal:  Genetics       Date:  1999-08       Impact factor: 4.562

2.  Equilibrium and kinetic binding interactions between DNA and a group of novel, nonspecific DNA-binding proteins from spores of Bacillus and Clostridium species.

Authors:  C S Hayes; Z Y Peng; P Setlow
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

3.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

4.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

5.  Structure of a protein-DNA complex essential for DNA protection in spores of Bacillus species.

Authors:  Ki Seog Lee; Daniela Bumbaca; Jeffrey Kosman; Peter Setlow; Mark J Jedrzejas
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

6.  Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction.

Authors:  Xing Zhang; Ethan Settembre; Chen Xu; Philip R Dormitzer; Richard Bellamy; Stephen C Harrison; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-31       Impact factor: 11.205

Review 7.  Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere.

Authors:  Mart Krupovic; David Prangishvili; Roger W Hendrix; Dennis H Bamford
Journal:  Microbiol Mol Biol Rev       Date:  2011-12       Impact factor: 11.056

8.  Synergy of NMR, computation, and X-ray crystallography for structural biology.

Authors:  Blair R Szymczyna; Rebecca E Taurog; Mark J Young; Jamie C Snyder; John E Johnson; James R Williamson
Journal:  Structure       Date:  2009-04-15       Impact factor: 5.006

9.  A unique virus release mechanism in the Archaea.

Authors:  Ariane Bize; Erik A Karlsson; Karin Ekefjärd; Tessa E F Quax; Mery Pina; Marie-Christine Prevost; Patrick Forterre; Olivier Tenaillon; Rolf Bernander; David Prangishvili
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-19       Impact factor: 11.205

10.  Detection of an en masse and reversible B- to A-DNA conformational transition in prokaryotes in response to desiccation.

Authors:  Donna R Whelan; Thomas J Hiscox; Julian I Rood; Keith R Bambery; Don McNaughton; Bayden R Wood
Journal:  J R Soc Interface       Date:  2014-08-06       Impact factor: 4.118

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  51 in total

1.  Rapid chemical decontamination of infectious CJD and scrapie particles parallels treatments known to disrupt microbes and biofilms.

Authors:  Sotirios Botsios; Sarah Tittman; Laura Manuelidis
Journal:  Virulence       Date:  2015       Impact factor: 5.882

2.  Circulating Extracellular Vesicles in Normotension Restrain Vasodilation in Resistance Arteries.

Authors:  Miranda E Good; Luca Musante; Sabrina La Salvia; Nancy L Howell; Robert M Carey; Thu H Le; Brant E Isakson; Uta Erdbrügger
Journal:  Hypertension       Date:  2019-11-25       Impact factor: 10.190

3.  New virus isolates from Italian hydrothermal environments underscore the biogeographic pattern in archaeal virus communities.

Authors:  Diana P Baquero; Patrizia Contursi; Monica Piochi; Simonetta Bartolucci; Ying Liu; Virginija Cvirkaite-Krupovic; David Prangishvili; Mart Krupovic
Journal:  ISME J       Date:  2020-04-22       Impact factor: 10.302

Review 4.  Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Authors:  Mart Krupovic; Virginija Cvirkaite-Krupovic; Jaime Iranzo; David Prangishvili; Eugene V Koonin
Journal:  Virus Res       Date:  2017-11-22       Impact factor: 3.303

5.  Cryo-EM of viruses and vaccine design.

Authors:  Lesley A Earl; Sriram Subramaniam
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-01       Impact factor: 11.205

Review 6.  The Current Revolution in Cryo-EM.

Authors:  Edward H Egelman
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

7.  DNA Conformational Changes Play a Force-Generating Role during Bacteriophage Genome Packaging.

Authors:  Kim A Sharp; Xiang-Jun Lu; Gino Cingolani; Stephen C Harvey
Journal:  Biophys J       Date:  2019-04-30       Impact factor: 4.033

8.  Novel Sulfolobus Virus with an Exceptional Capsid Architecture.

Authors:  Haina Wang; Zhenqian Guo; Hongli Feng; Yufei Chen; Xiuqiang Chen; Zhimeng Li; Walter Hernández-Ascencio; Xin Dai; Zhenfeng Zhang; Xiaowei Zheng; Marielos Mora-López; Yu Fu; Chuanlun Zhang; Ping Zhu; Li Huang
Journal:  J Virol       Date:  2018-02-12       Impact factor: 5.103

9.  Transitions of Double-Stranded DNA Between the A- and B-Forms.

Authors:  James T Waters; Xiang-Jun Lu; Rodrigo Galindo-Murillo; James C Gumbart; Harold D Kim; Thomas E Cheatham; Stephen C Harvey
Journal:  J Phys Chem B       Date:  2016-05-11       Impact factor: 2.991

10.  Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.

Authors:  Fengbin Wang; Diana P Baquero; Leticia C Beltran; Zhangli Su; Tomasz Osinski; Weili Zheng; David Prangishvili; Mart Krupovic; Edward H Egelman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-05       Impact factor: 11.205

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