Literature DB >> 32080621

Cryo-electron microscopy for the study of virus assembly.

Daniel Luque1, José R Castón2.   

Abstract

Although viruses are extremely diverse in shape and size, evolution has led to a limited number of viral classes or lineages, which is probably linked to the assembly constraints of a viable capsid. Viral assembly mechanisms are restricted to two general pathways, (i) co-assembly of capsid proteins and single-stranded nucleic acids and (ii) a sequential mechanism in which scaffolding-mediated capsid precursor assembly is followed by genome packaging. Cryo-electron microscopy (cryo-EM) and cryo-electron tomography (cryo-ET), which are revolutionizing structural biology, are central to determining the high-resolution structures of many viral assemblies as well as those of assembly intermediates. This wealth of cryo-EM data has also led to the development and redesign of virus-based platforms for biomedical and biotechnological applications. In this Review, we will discuss recent viral assembly analyses by cryo-EM and cryo-ET showing how natural assembly mechanisms are used to encapsulate heterologous cargos including chemicals, enzymes, and/or nucleic acids for a variety of nanotechnological applications.

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Year:  2020        PMID: 32080621     DOI: 10.1038/s41589-020-0477-1

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  95 in total

Review 1.  The basic architecture of viruses.

Authors:  José R Castón; José L Carrascosa
Journal:  Subcell Biochem       Date:  2013

2.  Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins.

Authors:  Miroslava Schaffer; Julia Mahamid; Benjamin D Engel; Tim Laugks; Wolfgang Baumeister; Jürgen M Plitzko
Journal:  J Struct Biol       Date:  2016-07-19       Impact factor: 2.867

3.  An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation.

Authors:  Florian K M Schur; Martin Obr; Wim J H Hagen; William Wan; Arjen J Jakobi; Joanna M Kirkpatrick; Carsten Sachse; Hans-Georg Kräusslich; John A G Briggs
Journal:  Science       Date:  2016-07-14       Impact factor: 47.728

Review 4.  Cryo-Electron Tomography and Subtomogram Averaging.

Authors:  W Wan; J A G Briggs
Journal:  Methods Enzymol       Date:  2016-06-22       Impact factor: 1.600

5.  Breaking Cryo-EM Resolution Barriers to Facilitate Drug Discovery.

Authors:  Alan Merk; Alberto Bartesaghi; Soojay Banerjee; Veronica Falconieri; Prashant Rao; Mindy I Davis; Rajan Pragani; Matthew B Boxer; Lesley A Earl; Jacqueline L S Milne; Sriram Subramaniam
Journal:  Cell       Date:  2016-05-26       Impact factor: 41.582

Review 6.  Biomedical and Catalytic Opportunities of Virus-Like Particles in Nanotechnology.

Authors:  B Schwarz; M Uchida; T Douglas
Journal:  Adv Virus Res       Date:  2016-11-08       Impact factor: 9.937

7.  Analytical Techniques to Characterize the Structure, Properties, and Assembly of Virus Capsids.

Authors:  Panagiotis Kondylis; Christopher J Schlicksup; Adam Zlotnick; Stephen C Jacobson
Journal:  Anal Chem       Date:  2018-12-03       Impact factor: 6.986

8.  A 3.8 Å resolution cryo-EM structure of a small protein bound to an imaging scaffold.

Authors:  Yuxi Liu; Duc T Huynh; Todd O Yeates
Journal:  Nat Commun       Date:  2019-04-23       Impact factor: 14.919

Review 9.  Cryo-electron tomography: the challenge of doing structural biology in situ.

Authors:  Vladan Lučič; Alexander Rigort; Wolfgang Baumeister
Journal:  J Cell Biol       Date:  2013-08-05       Impact factor: 10.539

10.  Hepatitis B virus core protein allosteric modulators can distort and disrupt intact capsids.

Authors:  Christopher John Schlicksup; Joseph Che-Yen Wang; Samson Francis; Balasubramanian Venkatakrishnan; William W Turner; Michael VanNieuwenhze; Adam Zlotnick
Journal:  Elife       Date:  2018-01-29       Impact factor: 8.140

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  16 in total

1.  Rapid prediction of crucial hotspot interactions for icosahedral viral capsid self-assembly by energy landscape atlasing validated by mutagenesis.

Authors:  Ruijin Wu; Rahul Prabhu; Aysegul Ozkan; Meera Sitharam
Journal:  PLoS Comput Biol       Date:  2020-10-20       Impact factor: 4.475

2.  Plasmodesmata Ultrastructure Determination Using Electron Tomography.

Authors:  Jules D Petit; Marie Glavier; Lysiane Brocard; Emmanuelle M F Bayer
Journal:  Methods Mol Biol       Date:  2022

3.  Dipole-spread-function engineering for simultaneously measuring the 3D orientations and 3D positions of fluorescent molecules.

Authors:  Tingting Wu; Jin Lu; Matthew D Lew
Journal:  Optica       Date:  2022-05-03       Impact factor: 10.644

4.  Cryo-electron Microscopy Structure, Assembly, and Mechanics Show Morphogenesis and Evolution of Human Picobirnavirus.

Authors:  Álvaro Ortega-Esteban; Carlos P Mata; María J Rodríguez-Espinosa; Daniel Luque; Nerea Irigoyen; Javier M Rodríguez; Pedro J de Pablo; José R Castón
Journal:  J Virol       Date:  2020-11-23       Impact factor: 5.103

5.  EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps.

Authors:  Jiahua He; Sheng-You Huang
Journal:  Brief Bioinform       Date:  2021-11-05       Impact factor: 11.622

6.  Membrane bending by protein phase separation.

Authors:  Feng Yuan; Haleh Alimohamadi; Brandon Bakka; Andrea N Trementozzi; Kasey J Day; Nicolas L Fawzi; Padmini Rangamani; Jeanne C Stachowiak
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-16       Impact factor: 12.779

Review 7.  Surfactants - Compounds for inactivation of SARS-CoV-2 and other enveloped viruses.

Authors:  Miriam Simon; Michael Veit; Klaus Osterrieder; Michael Gradzielski
Journal:  Curr Opin Colloid Interface Sci       Date:  2021-06-12       Impact factor: 6.448

Review 8.  Nanotechnological Applications Based on Bacterial Encapsulins.

Authors:  Javier M Rodríguez; Carolina Allende-Ballestero; Jeroen J L M Cornelissen; José R Castón
Journal:  Nanomaterials (Basel)       Date:  2021-06-01       Impact factor: 5.076

Review 9.  Imaging Infection Across Scales of Size: From Whole Animals to Single Molecules.

Authors:  Eric P Skaar
Journal:  Annu Rev Microbiol       Date:  2021-08-03       Impact factor: 16.232

Review 10.  NMR Studies of Retroviral Genome Packaging.

Authors:  Patricia S Boyd; Janae B Brown; Joshua D Brown; Jonathan Catazaro; Issac Chaudry; Pengfei Ding; Xinmei Dong; Jan Marchant; Colin T O'Hern; Karndeep Singh; Canessa Swanson; Michael F Summers; Saif Yasin
Journal:  Viruses       Date:  2020-09-30       Impact factor: 5.048

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