Literature DB >> 28787145

Chemically Controlled Epigenome Editing through an Inducible dCas9 System.

Tingjun Chen1, Dan Gao1, Roushu Zhang1, Guihua Zeng1, Hao Yan1, Eunju Lim1, Fu-Sen Liang1.   

Abstract

Although histone modifications are associated with gene activities, studies of their causal relationships have been difficult. For this purpose, we developed an inducible system integrating dCas9-based targeting and chemically induced proximity technologies to allow small molecule induced recruitment of P300 acetyltransferase and the acetylation of H3K27 at precise gene loci in cells. Employing the new technique, we elucidated the temporal order of histone acetylation and gene activation, as well as the stability of the installed histone modification.

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Year:  2017        PMID: 28787145      PMCID: PMC5599110          DOI: 10.1021/jacs.7b06555

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

Review 1.  Chemically controlled protein assembly: techniques and applications.

Authors:  Adrian Fegan; Brian White; Jonathan C T Carlson; Carston R Wagner
Journal:  Chem Rev       Date:  2010-06-09       Impact factor: 60.622

Review 2.  Charting histone modifications and the functional organization of mammalian genomes.

Authors:  Vicky W Zhou; Alon Goren; Bradley E Bernstein
Journal:  Nat Rev Genet       Date:  2010-11-30       Impact factor: 53.242

3.  Structure of the p300 catalytic core and implications for chromatin targeting and HAT regulation.

Authors:  Manuela Delvecchio; Jonathan Gaucher; Carmen Aguilar-Gurrieri; Esther Ortega; Daniel Panne
Journal:  Nat Struct Mol Biol       Date:  2013-08-11       Impact factor: 15.369

4.  Optical Control of CRISPR/Cas9 Gene Editing.

Authors:  James Hemphill; Erin K Borchardt; Kalyn Brown; Aravind Asokan; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2015-04-23       Impact factor: 15.419

5.  A split-Cas9 architecture for inducible genome editing and transcription modulation.

Authors:  Bernd Zetsche; Sara E Volz; Feng Zhang
Journal:  Nat Biotechnol       Date:  2015-02       Impact factor: 54.908

6.  Dynamics and memory of heterochromatin in living cells.

Authors:  Nathaniel A Hathaway; Oliver Bell; Courtney Hodges; Erik L Miller; Dana S Neel; Gerald R Crabtree
Journal:  Cell       Date:  2012-06-14       Impact factor: 41.582

7.  Light control of cellular processes by using photocaged abscisic acid.

Authors:  Catherine W Wright; Zhi-Fo Guo; Fu-Sen Liang
Journal:  Chembiochem       Date:  2014-12-21       Impact factor: 3.164

8.  Multidimensional chemical control of CRISPR-Cas9.

Authors:  Basudeb Maji; Christopher L Moore; Bernd Zetsche; Sara E Volz; Feng Zhang; Matthew D Shoulders; Amit Choudhary
Journal:  Nat Chem Biol       Date:  2016-10-31       Impact factor: 15.040

9.  Functional annotation of native enhancers with a Cas9-histone demethylase fusion.

Authors:  Nicola A Kearns; Hannah Pham; Barbara Tabak; Ryan M Genga; Noah J Silverstein; Manuel Garber; René Maehr
Journal:  Nat Methods       Date:  2015-03-16       Impact factor: 28.547

10.  CRISPR/Cas9 systems targeting β-globin and CCR5 genes have substantial off-target activity.

Authors:  Thomas J Cradick; Eli J Fine; Christopher J Antico; Gang Bao
Journal:  Nucleic Acids Res       Date:  2013-08-11       Impact factor: 16.971

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  17 in total

Review 1.  CRISPR technologies for precise epigenome editing.

Authors:  Muneaki Nakamura; Yuchen Gao; Antonia A Dominguez; Lei S Qi
Journal:  Nat Cell Biol       Date:  2021-01-08       Impact factor: 28.824

2.  Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers.

Authors:  Anna M Chiarella; Tiffany A Wang; Kyle V Butler; Jian Jin; Nathaniel A Hathaway
Journal:  J Vis Exp       Date:  2018-09-20       Impact factor: 1.355

3.  CRISPR-Cas-Mediated Chemical Control of Transcriptional Dynamics in Yeast.

Authors:  Daniel Cunningham-Bryant; Jingwen Sun; Brianna Fernandez; Jesse G Zalatan
Journal:  Chembiochem       Date:  2019-04-26       Impact factor: 3.164

Review 4.  PIWI-Interacting RNA (piRNA) and Epigenetic Editing in Environmental Health Sciences.

Authors:  Bambarendage P U Perera; Rachel K Morgan; Katelyn M Polemi; Kimmie E Sala-Hamrick; Laurie K Svoboda; Dana C Dolinoy
Journal:  Curr Environ Health Rep       Date:  2022-08-02

5.  Small-molecule inducible transcriptional control in mammalian cells.

Authors:  Aarti Doshi; Fatemeh Sadeghi; Navin Varadarajan; Patrick C Cirino
Journal:  Crit Rev Biotechnol       Date:  2020-08-30       Impact factor: 8.429

6.  Terminal Uridylyl Transferase Mediated Site-Directed Access to Clickable Chromatin Employing CRISPR-dCas9.

Authors:  Jerrin Thomas George; Mohd Azhar; Meghali Aich; Dipanjali Sinha; Uddhav B Ambi; Souvik Maiti; Debojyoti Chakraborty; Seergazhi G Srivatsan
Journal:  J Am Chem Soc       Date:  2020-07-28       Impact factor: 15.419

7.  Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function in Bacterial and Mammalian Cells via Dynamic RNA Nanotechnology.

Authors:  Mikhail H Hanewich-Hollatz; Zhewei Chen; Lisa M Hochrein; Jining Huang; Niles A Pierce
Journal:  ACS Cent Sci       Date:  2019-06-04       Impact factor: 14.553

8.  Photocontrol of CRISPR/Cas9 function by site-specific chemical modification of guide RNA.

Authors:  Yang Wang; Yan Liu; Fan Xie; Jiao Lin; Liang Xu
Journal:  Chem Sci       Date:  2020-09-25       Impact factor: 9.825

Review 9.  Next-Generation Drugs and Probes for Chromatin Biology: From Targeted Protein Degradation to Phase Separation.

Authors:  Katerina Cermakova; H Courtney Hodges
Journal:  Molecules       Date:  2018-08-06       Impact factor: 4.411

10.  Anti-CRISPR-mediated control of gene editing and synthetic circuits in eukaryotic cells.

Authors:  Muneaki Nakamura; Prashanth Srinivasan; Michael Chavez; Matthew A Carter; Antonia A Dominguez; Marie La Russa; Matthew B Lau; Timothy R Abbott; Xiaoshu Xu; Dehua Zhao; Yuchen Gao; Nathan H Kipniss; Christina D Smolke; Joseph Bondy-Denomy; Lei S Qi
Journal:  Nat Commun       Date:  2019-01-14       Impact factor: 14.919

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