Literature DB >> 33420494

CRISPR technologies for precise epigenome editing.

Muneaki Nakamura1, Yuchen Gao1,2,3, Antonia A Dominguez1,4, Lei S Qi5,6,7.   

Abstract

The epigenome involves a complex set of cellular processes governing genomic activity. Dissecting this complexity necessitates the development of tools capable of specifically manipulating these processes. The repurposing of prokaryotic CRISPR systems has allowed for the development of diverse technologies for epigenome engineering. Here, we review the state of currently achievable epigenetic manipulations along with corresponding applications. With future optimization, CRISPR-based epigenomic editing stands as a set of powerful tools for understanding and controlling biological function.

Mesh:

Year:  2021        PMID: 33420494     DOI: 10.1038/s41556-020-00620-7

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  158 in total

Review 1.  DNA methylation pathways and their crosstalk with histone methylation.

Authors:  Jiamu Du; Lianna M Johnson; Steven E Jacobsen; Dinshaw J Patel
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09       Impact factor: 94.444

2.  Chromatin position effects assayed by thousands of reporters integrated in parallel.

Authors:  Waseem Akhtar; Johann de Jong; Alexey V Pindyurin; Ludo Pagie; Wouter Meuleman; Jeroen de Ridder; Anton Berns; Lodewyk F A Wessels; Maarten van Lohuizen; Bas van Steensel
Journal:  Cell       Date:  2013-08-15       Impact factor: 41.582

Review 3.  Chromatin accessibility and the regulatory epigenome.

Authors:  Sandy L Klemm; Zohar Shipony; William J Greenleaf
Journal:  Nat Rev Genet       Date:  2019-04       Impact factor: 53.242

4.  Anovaginal fistula presenting as a vulvar ulcer. A report of two cases in postmenopausal women.

Authors:  W E Josey
Journal:  J Reprod Med       Date:  1988-10       Impact factor: 0.142

Review 5.  Mechanisms of Interplay between Transcription Factors and the 3D Genome.

Authors:  Seungsoo Kim; Jay Shendure
Journal:  Mol Cell       Date:  2019-09-11       Impact factor: 17.970

Review 6.  Chromatin-associated RNAs as facilitators of functional genomic interactions.

Authors:  Xiao Li; Xiang-Dong Fu
Journal:  Nat Rev Genet       Date:  2019-09       Impact factor: 53.242

Review 7.  Integrative single-cell analysis.

Authors:  Tim Stuart; Rahul Satija
Journal:  Nat Rev Genet       Date:  2019-05       Impact factor: 53.242

Review 8.  Advances in epigenetics link genetics to the environment and disease.

Authors:  Giacomo Cavalli; Edith Heard
Journal:  Nature       Date:  2019-07-24       Impact factor: 49.962

9.  Histone ubiquitination and deubiquitination in transcription, DNA damage response, and cancer.

Authors:  Jian Cao; Qin Yan
Journal:  Front Oncol       Date:  2012-03-12       Impact factor: 6.244

10.  Expanded encyclopaedias of DNA elements in the human and mouse genomes.

Authors:  Jill E Moore; Michael J Purcaro; Henry E Pratt; Charles B Epstein; Noam Shoresh; Jessika Adrian; Trupti Kawli; Carrie A Davis; Alexander Dobin; Rajinder Kaul; Jessica Halow; Eric L Van Nostrand; Peter Freese; David U Gorkin; Yin Shen; Yupeng He; Mark Mackiewicz; Florencia Pauli-Behn; Brian A Williams; Ali Mortazavi; Cheryl A Keller; Xiao-Ou Zhang; Shaimae I Elhajjajy; Jack Huey; Diane E Dickel; Valentina Snetkova; Xintao Wei; Xiaofeng Wang; Juan Carlos Rivera-Mulia; Joel Rozowsky; Jing Zhang; Surya B Chhetri; Jialing Zhang; Alec Victorsen; Kevin P White; Axel Visel; Gene W Yeo; Christopher B Burge; Eric Lécuyer; David M Gilbert; Job Dekker; John Rinn; Eric M Mendenhall; Joseph R Ecker; Manolis Kellis; Robert J Klein; William S Noble; Anshul Kundaje; Roderic Guigó; Peggy J Farnham; J Michael Cherry; Richard M Myers; Bing Ren; Brenton R Graveley; Mark B Gerstein; Len A Pennacchio; Michael P Snyder; Bradley E Bernstein; Barbara Wold; Ross C Hardison; Thomas R Gingeras; John A Stamatoyannopoulos; Zhiping Weng
Journal:  Nature       Date:  2020-07-29       Impact factor: 69.504

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  42 in total

1.  A red light-responsive photoswitch for deep tissue optogenetics.

Authors:  Yuto Kuwasaki; Kazushi Suzuki; Gaigai Yu; Shota Yamamoto; Takahiro Otabe; Yuki Kakihara; Michiru Nishiwaki; Keita Miyake; Keiji Fushimi; Ramsey Bekdash; Yoshihiro Shimizu; Rei Narikawa; Takahiro Nakajima; Masayuki Yazawa; Moritoshi Sato
Journal:  Nat Biotechnol       Date:  2022-06-13       Impact factor: 54.908

Review 2.  Epigenome editing: targeted manipulation of epigenetic modifications in plants.

Authors:  Hosub Shin; Woo Lee Choi; Joo Young Lim; Jin Hoe Huh
Journal:  Genes Genomics       Date:  2022-01-09       Impact factor: 1.839

Review 3.  A new era in functional genomics screens.

Authors:  Laralynne Przybyla; Luke A Gilbert
Journal:  Nat Rev Genet       Date:  2021-09-20       Impact factor: 53.242

4.  Combination of lentiviral and genome editing technologies for the treatment of sickle cell disease.

Authors:  Sophie Ramadier; Anne Chalumeau; Tristan Felix; Nadia Othman; Sherazade Aknoun; Antonio Casini; Giulia Maule; Cecile Masson; Anne De Cian; Giacomo Frati; Megane Brusson; Jean-Paul Concordet; Marina Cavazzana; Anna Cereseto; Wassim El Nemer; Mario Amendola; Benoit Wattellier; Vasco Meneghini; Annarita Miccio
Journal:  Mol Ther       Date:  2021-08-19       Impact factor: 11.454

Review 5.  Tutorial: design and execution of CRISPR in vivo screens.

Authors:  Christian J Braun; Andrés Carbonell Adames; Dieter Saur; Roland Rad
Journal:  Nat Protoc       Date:  2022-07-15       Impact factor: 17.021

Review 6.  Programmable Genome-Editing Technologies as Single-Course Therapeutics for Atherosclerotic Cardiovascular Disease.

Authors:  Ishaan Jindal; Xiao Wang
Journal:  Curr Atheroscler Rep       Date:  2022-08-22       Impact factor: 5.967

Review 7.  Developing Bottom-Up Induced Pluripotent Stem Cell Derived Solid Tumor Models Using Precision Genome Editing Technologies.

Authors:  Kelsie L Becklin; Garrett M Draper; Rebecca A Madden; Mitchell G Kluesner; Tomoyuki Koga; Miller Huang; William A Weiss; Logan G Spector; David A Largaespada; Branden S Moriarity; Beau R Webber
Journal:  CRISPR J       Date:  2022-08

Review 8.  CRISPR/Cas9: Principle, Applications, and Delivery through Extracellular Vesicles.

Authors:  Katarzyna Horodecka; Markus Düchler
Journal:  Int J Mol Sci       Date:  2021-06-04       Impact factor: 5.923

9.  Interrogation of the dynamic properties of higher-order heterochromatin using CRISPR-dCas9.

Authors:  Yuchen Gao; Mengting Han; Stephen Shang; Haifeng Wang; Lei S Qi
Journal:  Mol Cell       Date:  2021-08-23       Impact factor: 19.328

Review 10.  (Epi)Genetic Mechanisms Underlying the Evolutionary Success of Eusocial Insects.

Authors:  Kayli R Sieber; Taylor Dorman; Nicholas Newell; Hua Yan
Journal:  Insects       Date:  2021-05-27       Impact factor: 2.769

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