Literature DB >> 28762198

Directly watching biomolecules in action by high-speed atomic force microscopy.

Toshio Ando1,2.   

Abstract

Proteins are dynamic in nature and work at the single molecule level. Therefore, directly watching protein molecules in dynamic action at high spatiotemporal resolution must be the most straightforward approach to understanding how they function. To make this observation possible, high-speed atomic force microscopy (HS-AFM) has been developed. Its current performance allows us to film biological molecules at 10-16 frames/s, without disturbing their function. In fact, dynamic structures and processes of various proteins have been successfully visualized, including bacteriorhodopsin responding to light, myosin V walking on actin filaments, and even intrinsically disordered proteins undergoing order/disorder transitions. The molecular movies have provided insights that could not have been reached in other ways. Moreover, the cantilever tip can be used to manipulate molecules during successive imaging. This capability allows us to observe changes in molecules resulting from dissection or perturbation. This mode of imaging has been successfully applied to myosin V, peroxiredoxin and doublet microtubules, leading to new discoveries. Since HS-AFM can be combined with other techniques, such as super-resolution optical microscopy and optical tweezers, the usefulness of HS-AFM will be further expanded in the near future.

Entities:  

Keywords:  Dynamic processes; High-speed AFM; Imaging; Proteins; Structural changes

Year:  2017        PMID: 28762198      PMCID: PMC5578924          DOI: 10.1007/s12551-017-0281-7

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  52 in total

1.  Video imaging of walking myosin V by high-speed atomic force microscopy.

Authors:  Noriyuki Kodera; Daisuke Yamamoto; Ryoki Ishikawa; Toshio Ando
Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

Review 2.  Functional extension of high-speed AFM for wider biological applications.

Authors:  Takayuki Uchihashi; Hiroki Watanabe; Shingo Fukuda; Mikihiro Shibata; Toshio Ando
Journal:  Ultramicroscopy       Date:  2015-10-17       Impact factor: 2.689

3.  Cofilin-induced unidirectional cooperative conformational changes in actin filaments revealed by high-speed atomic force microscopy.

Authors:  Kien Xuan Ngo; Noriyuki Kodera; Eisaku Katayama; Toshio Ando; Taro Q P Uyeda
Journal:  Elife       Date:  2015-02-02       Impact factor: 8.140

4.  Wide-area scanner for high-speed atomic force microscopy.

Authors:  Hiroki Watanabe; Takayuki Uchihashi; Toshihide Kobashi; Mikihiro Shibata; Jun Nishiyama; Ryohei Yasuda; Toshio Ando
Journal:  Rev Sci Instrum       Date:  2013-05       Impact factor: 1.523

5.  Direct observation of stepwise movement of a synthetic molecular transporter.

Authors:  Shelley F J Wickham; Masayuki Endo; Yousuke Katsuda; Kumi Hidaka; Jonathan Bath; Hiroshi Sugiyama; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2011-02-06       Impact factor: 39.213

6.  High-speed atomic force microscopy shows dynamic molecular processes in photoactivated bacteriorhodopsin.

Authors:  Mikihiro Shibata; Hayato Yamashita; Takayuki Uchihashi; Hideki Kandori; Toshio Ando
Journal:  Nat Nanotechnol       Date:  2010-02-14       Impact factor: 39.213

7.  Two-ball structure of the flagellar hook-length control protein FliK as revealed by high-speed atomic force microscopy.

Authors:  Noriyuki Kodera; Kaoru Uchida; Toshio Ando; Shin-Ichi Aizawa
Journal:  J Mol Biol       Date:  2014-11-15       Impact factor: 5.469

Review 8.  Intrinsically disordered proteins in cellular signalling and regulation.

Authors:  Peter E Wright; H Jane Dyson
Journal:  Nat Rev Mol Cell Biol       Date:  2015-01       Impact factor: 94.444

9.  Deciphering the structure, growth and assembly of amyloid-like fibrils using high-speed atomic force microscopy.

Authors:  Pierre-Emmanuel Milhiet; Daisuke Yamamoto; Olivia Berthoumieu; Patrice Dosset; Christian Le Grimellec; Jean-Michel Verdier; Stéphane Marchal; Toshio Ando
Journal:  PLoS One       Date:  2010-10-08       Impact factor: 3.240

10.  Direct Visualization of Walking Motions of Photocontrolled Nanomachine on the DNA Nanostructure.

Authors:  Yangyang Yang; Marisa A Goetzfried; Kumi Hidaka; Mingxu You; Weihong Tan; Hiroshi Sugiyama; Masayuki Endo
Journal:  Nano Lett       Date:  2015-09-03       Impact factor: 11.189

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  13 in total

Review 1.  Multiple analyses of protein dynamics in solution.

Authors:  Tadayuki Ogawa; Nobutaka Hirokawa
Journal:  Biophys Rev       Date:  2017-12-04

Review 2.  High-speed atomic force microscopy and its future prospects.

Authors:  Toshio Ando
Journal:  Biophys Rev       Date:  2017-12-18

3.  Direct AFM Visualization of the Nanoscale Dynamics of Biomolecular Complexes.

Authors:  Yuri L Lyubchenko
Journal:  J Phys D Appl Phys       Date:  2018-08-20       Impact factor: 3.207

4.  Simultaneous Quantification of the Interplay Between Molecular Turnover and Cell Mechanics by AFM-FRAP.

Authors:  Mark Skamrahl; Huw Colin-York; Liliana Barbieri; Marco Fritzsche
Journal:  Small       Date:  2019-08-16       Impact factor: 15.153

5.  Visualization of Single Molecules Building a Viral Capsid Protein Lattice through Stochastic Pathways.

Authors:  Alejandro Valbuena; Sourav Maity; Mauricio G Mateu; Wouter H Roos
Journal:  ACS Nano       Date:  2020-07-07       Impact factor: 15.881

Review 6.  Algal Viruses: The (Atomic) Shape of Things to Come.

Authors:  Christopher T Evans; Oliver Payton; Loren Picco; Michael J Allen
Journal:  Viruses       Date:  2018-09-12       Impact factor: 5.048

7.  An ultra-wide scanner for large-area high-speed atomic force microscopy with megapixel resolution.

Authors:  Arin Marchesi; Kenichi Umeda; Takumi Komekawa; Takeru Matsubara; Holger Flechsig; Toshio Ando; Shinji Watanabe; Noriyuki Kodera; Clemens M Franz
Journal:  Sci Rep       Date:  2021-06-21       Impact factor: 4.379

Review 8.  Quantifying single-platelet biomechanics: An outsider's guide to biophysical methods and recent advances.

Authors:  Laura Sachs; Christian Denker; Andreas Greinacher; Raghavendra Palankar
Journal:  Res Pract Thromb Haemost       Date:  2020-02-17

Review 9.  Biological physics by high-speed atomic force microscopy.

Authors:  Ignacio Casuso; Lorena Redondo-Morata; Felix Rico
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-10-26       Impact factor: 4.226

Review 10.  Combining Experimental Data and Computational Methods for the Non-Computer Specialist.

Authors:  Reinier Cárdenas; Javier Martínez-Seoane; Carlos Amero
Journal:  Molecules       Date:  2020-10-18       Impact factor: 4.411

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