Literature DB >> 21297627

Direct observation of stepwise movement of a synthetic molecular transporter.

Shelley F J Wickham1, Masayuki Endo, Yousuke Katsuda, Kumi Hidaka, Jonathan Bath, Hiroshi Sugiyama, Andrew J Turberfield.   

Abstract

Controlled motion at the nanoscale can be achieved by using Watson-Crick base-pairing to direct the assembly and operation of a molecular transport system consisting of a track, a motor and fuel, all made from DNA. Here, we assemble a 100-nm-long DNA track on a two-dimensional scaffold, and show that a DNA motor loaded at one end of the track moves autonomously and at a constant average speed along the full length of the track, a journey comprising 16 consecutive steps for the motor. Real-time atomic force microscopy allows direct observation of individual steps of a single motor, revealing mechanistic details of its operation. This precisely controlled, long-range transport could lead to the development of systems that could be programmed and routed by instructions encoded in the nucleotide sequences of the track and motor. Such systems might be used to create molecular assembly lines modelled on the ribosome.

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Year:  2011        PMID: 21297627     DOI: 10.1038/nnano.2010.284

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  25 in total

1.  A high-speed atomic force microscope for studying biological macromolecules.

Authors:  T Ando; N Kodera; E Takai; D Maruyama; K Saito; A Toda
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-09       Impact factor: 11.205

2.  DNA fuel for free-running nanomachines.

Authors:  A J Turberfield; J C Mitchell; B Yurke; A P Mills; M I Blakey; F C Simmel
Journal:  Phys Rev Lett       Date:  2003-03-18       Impact factor: 9.161

3.  Molecular gears: a pair of DNA circles continuously rolls against each other.

Authors:  Ye Tian; Chengde Mao
Journal:  J Am Chem Soc       Date:  2004-09-22       Impact factor: 15.419

4.  Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI.

Authors:  Daniel F Heiter; Keith D Lunnen; Geoffrey G Wilson
Journal:  J Mol Biol       Date:  2005-05-06       Impact factor: 5.469

5.  A free-running DNA motor powered by a nicking enzyme.

Authors:  Jonathan Bath; Simon J Green; Andrew J Turberfield
Journal:  Angew Chem Int Ed Engl       Date:  2005-07-11       Impact factor: 15.336

6.  DNA hairpins: fuel for autonomous DNA devices.

Authors:  Simon J Green; Daniel Lubrich; Andrew J Turberfield
Journal:  Biophys J       Date:  2006-07-21       Impact factor: 4.033

7.  Behavior of polycatalytic assemblies in a substrate-displaying matrix.

Authors:  Renjun Pei; Steven K Taylor; Darko Stefanovic; Sergei Rudchenko; Tiffany E Mitchell; Milan N Stojanovic
Journal:  J Am Chem Soc       Date:  2006-10-04       Impact factor: 15.419

8.  Molecular spiders with memory.

Authors:  Tibor Antal; P L Krapivsky
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-24

9.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

10.  Programming biomolecular self-assembly pathways.

Authors:  Peng Yin; Harry M T Choi; Colby R Calvert; Niles A Pierce
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

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  62 in total

1.  Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy.

Authors:  Takayuki Uchihashi; Noriyuki Kodera; Toshio Ando
Journal:  Nat Protoc       Date:  2012-05-24       Impact factor: 13.491

Review 2.  Artificial Molecular Machines.

Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

3.  Guiding the folding pathway of DNA origami.

Authors:  Katherine E Dunn; Frits Dannenberg; Thomas E Ouldridge; Marta Kwiatkowska; Andrew J Turberfield; Jonathan Bath
Journal:  Nature       Date:  2015-08-19       Impact factor: 49.962

4.  Hitching a ride with motor proteins.

Authors: 
Journal:  Nat Nanotechnol       Date:  2014-01       Impact factor: 39.213

5.  Scaling down DNA circuits with competitive neural networks.

Authors:  Anthony J Genot; Teruo Fujii; Yannick Rondelez
Journal:  J R Soc Interface       Date:  2013-06-12       Impact factor: 4.118

Review 6.  Bioapplications of DNA nanotechnology at the solid-liquid interface.

Authors:  Wenjing Wang; Sha Yu; Shan Huang; Sai Bi; Heyou Han; Jian-Rong Zhang; Yi Lu; Jun-Jie Zhu
Journal:  Chem Soc Rev       Date:  2019-09-16       Impact factor: 54.564

Review 7.  [Progress in the applications of high-speed atomic force microscopy in cell biology].

Authors:  Lin Liu; Yuhui Wei; Wenjing Liu; Tong Sun; Kaizhe Wang; Ying Wang; Bin Li
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2018-07-30

8.  Hierarchical Self Assembly of Patterns from the Robinson Tilings: DNA Tile Design in an Enhanced Tile Assembly Model.

Authors:  Jennifer E Padilla; Wenyan Liu; Nadrian C Seeman
Journal:  Nat Comput       Date:  2012-06-01       Impact factor: 1.690

9.  Controlled clockwise and anticlockwise rotational switching of a molecular motor.

Authors:  U G E Perera; F Ample; H Kersell; Y Zhang; G Vives; J Echeverria; M Grisolia; G Rapenne; C Joachim; S-W Hla
Journal:  Nat Nanotechnol       Date:  2012-12-23       Impact factor: 39.213

10.  Nucleic acid-based nanoengineering: novel structures for biomedical applications.

Authors:  Hanying Li; Thomas H Labean; Kam W Leong
Journal:  Interface Focus       Date:  2011-06-28       Impact factor: 3.906

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