Literature DB >> 26302358

Direct Visualization of Walking Motions of Photocontrolled Nanomachine on the DNA Nanostructure.

Yangyang Yang1,2, Marisa A Goetzfried2, Kumi Hidaka2, Mingxu You3,4, Weihong Tan3,4, Hiroshi Sugiyama1,2, Masayuki Endo1.   

Abstract

A light-driven artificial molecular nanomachine was constructed based on DNA scaffolding. Pyrene-modified walking strands and disulfide bond-connected stator strands, employed as anchorage sites to support walker movement, were assembled into a 2D DNA tile. Pyrene molecules excited by photoirradiation at 350 nm induced cleavage of disulfide bond-connected stator strands, enabling the DNA walker to migrate from one cleaved stator to the next on the DNA tile. The time-dependent movement of the walker was observed and the entire walking process of the walker was characterized by distribution of the walker-stator duplex at four anchorage sites on the tile under different irradiation times. Importantly, the light-fuelled mechanical movements on DNA tile were first visualized in real time during UV irradiation using high-speed atomic force microscopy (HS-AFM).

Entities:  

Keywords:  DNA motor; DNA origami; high-speed AFM; light-driven; single molecule analysis

Mesh:

Substances:

Year:  2015        PMID: 26302358      PMCID: PMC5507700          DOI: 10.1021/acs.nanolett.5b02502

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  26 in total

1.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

Review 2.  Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy.

Authors:  Keir C Neuman; Attila Nagy
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

3.  Direct observation of stepwise movement of a synthetic molecular transporter.

Authors:  Shelley F J Wickham; Masayuki Endo; Yousuke Katsuda; Kumi Hidaka; Jonathan Bath; Hiroshi Sugiyama; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2011-02-06       Impact factor: 39.213

4.  Direct AFM observation of an opening event of a DNA cuboid constructed via a prism structure.

Authors:  Masayuki Endo; Kumi Hidaka; Hiroshi Sugiyama
Journal:  Org Biomol Chem       Date:  2011-02-22       Impact factor: 3.876

5.  Single-molecule visualization of the hybridization and dissociation of photoresponsive oligonucleotides and their reversible switching behavior in a DNA nanostructure.

Authors:  Masayuki Endo; Yangyang Yang; Yuki Suzuki; Kumi Hidaka; Hiroshi Sugiyama
Journal:  Angew Chem Int Ed Engl       Date:  2012-09-10       Impact factor: 15.336

6.  Direct and real-time observation of rotary movement of a DNA nanomechanical device.

Authors:  Arivazhagan Rajendran; Masayuki Endo; Kumi Hidaka; Hiroshi Sugiyama
Journal:  J Am Chem Soc       Date:  2013-01-11       Impact factor: 15.419

7.  A DNA-based molecular motor that can navigate a network of tracks.

Authors:  Shelley F J Wickham; Jonathan Bath; Yousuke Katsuda; Masayuki Endo; Kumi Hidaka; Hiroshi Sugiyama; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2012-01-22       Impact factor: 39.213

8.  Direct observation of the dual-switching behaviors corresponding to the state transition in a DNA nanoframe.

Authors:  Yangyang Yang; Masayuki Endo; Yuki Suzuki; Kumi Hidaka; Hiroshi Sugiyama
Journal:  Chem Commun (Camb)       Date:  2014-04-25       Impact factor: 6.222

9.  A bipedal DNA motor that travels back and forth between two DNA origami tiles.

Authors:  Miran Liber; Toma E Tomov; Roman Tsukanov; Yaron Berger; Eyal Nir
Journal:  Small       Date:  2014-09-18       Impact factor: 13.281

10.  Building a nanostructure with reversible motions using photonic energy.

Authors:  Mingxu You; Fujian Huang; Zhuo Chen; Ruo-Wen Wang; Weihong Tan
Journal:  ACS Nano       Date:  2012-07-26       Impact factor: 15.881

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  15 in total

Review 1.  Bioapplications of DNA nanotechnology at the solid-liquid interface.

Authors:  Wenjing Wang; Sha Yu; Shan Huang; Sai Bi; Heyou Han; Jian-Rong Zhang; Yi Lu; Jun-Jie Zhu
Journal:  Chem Soc Rev       Date:  2019-09-16       Impact factor: 54.564

Review 2.  [Progress in the applications of high-speed atomic force microscopy in cell biology].

Authors:  Lin Liu; Yuhui Wei; Wenjing Liu; Tong Sun; Kaizhe Wang; Ying Wang; Bin Li
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2018-07-30

Review 3.  Directly watching biomolecules in action by high-speed atomic force microscopy.

Authors:  Toshio Ando
Journal:  Biophys Rev       Date:  2017-07-31

Review 4.  Advanced Nanoscale Approaches to Single-(Bio)entity Sensing and Imaging.

Authors:  Marta Maria Pereira da Silva Neves; Daniel Martín-Yerga
Journal:  Biosensors (Basel)       Date:  2018-10-26

5.  A highly integrated DNA nanomachine operating in living cells powered by an endogenous stimulus.

Authors:  Pei-Qiang Ma; Cheng-Pin Liang; He-Hua Zhang; Bin-Cheng Yin; Bang-Ce Ye
Journal:  Chem Sci       Date:  2018-02-23       Impact factor: 9.825

Review 6.  DNA Origami Nanomachines.

Authors:  Masayuki Endo; Hiroshi Sugiyama
Journal:  Molecules       Date:  2018-07-18       Impact factor: 4.411

Review 7.  Robotic DNA Nanostructures.

Authors:  Sami Nummelin; Boxuan Shen; Petteri Piskunen; Qing Liu; Mauri A Kostiainen; Veikko Linko
Journal:  ACS Synth Biol       Date:  2020-07-12       Impact factor: 5.110

Review 8.  Recent Advances in Nucleic Acid Targeting Probes and Supramolecular Constructs Based on Pyrene-Modified Oligonucleotides.

Authors:  Olga A Krasheninina; Darya S Novopashina; Evgeny K Apartsin; Alya G Venyaminova
Journal:  Molecules       Date:  2017-11-30       Impact factor: 4.411

Review 9.  Structural stability of DNA origami nanostructures under application-specific conditions.

Authors:  Saminathan Ramakrishnan; Heini Ijäs; Veikko Linko; Adrian Keller
Journal:  Comput Struct Biotechnol J       Date:  2018-09-18       Impact factor: 7.271

Review 10.  DNA Assembly-Based Stimuli-Responsive Systems.

Authors:  Shasha Lu; Jianlei Shen; Chunhai Fan; Qian Li; Xiurong Yang
Journal:  Adv Sci (Weinh)       Date:  2021-05-14       Impact factor: 16.806

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