Literature DB >> 29204883

Multiple analyses of protein dynamics in solution.

Tadayuki Ogawa1, Nobutaka Hirokawa2,3.   

Abstract

The need for accurate description of protein behavior in solution has gained importance in various fields, including biophysics, biochemistry, structural biology, drug discovery, and antibody drugs. To achieve the desired accuracy, multiple precise analyses should be performed on the target molecule, compared, and effectively combined. This review focuses on the combination of multiple analyses in solution: size-exclusion chromatography (SEC), multi-angle light scattering (MALS), small-angle X-ray scattering (SAXS), analytical ultracentrifugation (AUC), and their complementary methods, such as atomic force microscopy (AFM) and mass spectrometry (MS). We also discuss the comparison between the determined molar mass value of not only the standard proteins, but of a target molecule tubulin and its depolymerizing protein, KIF2, as an example. The comparison of the estimated molar mass value from the different methods provides additional information about the target molecule, because the value reflects the dynamically changing states of the target molecule in solution. The combination and integration of multiple methods will permit a deeper understanding of protein dynamics in solution.

Entities:  

Keywords:  Analytical ultracentrifugation (AUC); Kinesin; Microtubule; Multi-angle light scattering (MALS); Size-exclusion chromatography (SEC); Small-angle X-ray scattering (SAXS)

Year:  2017        PMID: 29204883      PMCID: PMC5899714          DOI: 10.1007/s12551-017-0354-7

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  19 in total

1.  A common mechanism for microtubule destabilizers-M type kinesins stabilize curling of the protofilament using the class-specific neck and loops.

Authors:  Tadayuki Ogawa; Ryo Nitta; Yasushi Okada; Nobutaka Hirokawa
Journal:  Cell       Date:  2004-02-20       Impact factor: 41.582

2.  Video imaging of walking myosin V by high-speed atomic force microscopy.

Authors:  Noriyuki Kodera; Daisuke Yamamoto; Ryoki Ishikawa; Toshio Ando
Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

3.  Kin I kinesins are microtubule-destabilizing enzymes.

Authors:  A Desai; S Verma; T J Mitchison; C E Walczak
Journal:  Cell       Date:  1999-01-08       Impact factor: 41.582

4.  Submicrometer Particle Sizing by Multiangle Light Scattering following Fractionation

Authors: 
Journal:  J Colloid Interface Sci       Date:  1998-01-01       Impact factor: 8.128

Review 5.  Molecular assembly and structure of the bacteriophage T4 tail.

Authors:  Fumio Arisaka; Moh Lan Yap; Shuji Kanamaru; Michael G Rossmann
Journal:  Biophys Rev       Date:  2016-11-05

Review 6.  Directly watching biomolecules in action by high-speed atomic force microscopy.

Authors:  Toshio Ando
Journal:  Biophys Rev       Date:  2017-07-31

7.  Structure of a dominant-negative helix-loop-helix transcriptional regulator suggests mechanisms of autoinhibition.

Authors:  Ryohei Ishii; Kazunobu Isogaya; Azusa Seto; Daizo Koinuma; Yuji Watanabe; Fumio Arisaka; So-ichi Yaguchi; Hiroaki Ikushima; Naoshi Dohmae; Kohei Miyazono; Keiji Miyazawa; Ryuichiro Ishitani; Osamu Nureki
Journal:  EMBO J       Date:  2012-03-27       Impact factor: 11.598

8.  Characterization of monoclonal antibody size variants containing extra light chains.

Authors:  Connie Lu; Dandan Liu; Hongbin Liu; Paul Motchnik
Journal:  MAbs       Date:  2012-12-19       Impact factor: 5.857

9.  Enrichment and characterization of ferritin for nanomaterial applications.

Authors:  Rodolfo Ghirlando; Radina Mutskova; Chad Schwartz
Journal:  Nanotechnology       Date:  2015-12-14       Impact factor: 3.874

10.  Analytical Ultracentrifugation as a Tool for Studying Protein Interactions.

Authors:  Peter Schuck
Journal:  Biophys Rev       Date:  2013-06-01
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  2 in total

1.  Foreword to 'Multiscale structural biology: biophysical principles and mechanisms underlying the action of bio-nanomachines', a special issue in Honour of Fumio Arisaka's 70th birthday.

Authors:  Damien Hall; Junichi Takagi; Haruki Nakamura
Journal:  Biophys Rev       Date:  2018-03-02

2.  Enhanced carbonyl stress induces irreversible multimerization of CRMP2 in schizophrenia pathogenesis.

Authors:  Manabu Toyoshima; Xuguang Jiang; Tadayuki Ogawa; Tetsuo Ohnishi; Shogo Yoshihara; Shabeesh Balan; Takeo Yoshikawa; Nobutaka Hirokawa
Journal:  Life Sci Alliance       Date:  2019-10-07
  2 in total

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