Literature DB >> 30410191

Direct AFM Visualization of the Nanoscale Dynamics of Biomolecular Complexes.

Yuri L Lyubchenko1.   

Abstract

High-speed AFM (HS-AFM) is an advanced technique with numerous applications in biology, particularly in molecular biophysics. Developed as a time-lapse AFM technique for direct imaging fully hydrated biological molecules, HS-AFM is currently capable of visualizing the dynamics of biological molecules and their complexes at a video-data acquisition rate. Spatial resolution at the nanometer level is another important characteristic of HS-AFM. This review focuses on examples of primarily protein-DNA complexes to illustrate the high temporal and spatial resolution capabilities of HS-AFM that have resulted in novel models and/or the functional mechanisms of these biological systems.

Entities:  

Year:  2018        PMID: 30410191      PMCID: PMC6217977          DOI: 10.1088/1361-6463/aad898

Source DB:  PubMed          Journal:  J Phys D Appl Phys        ISSN: 0022-3727            Impact factor:   3.207


  102 in total

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Journal:  Trends Cell Biol       Date:  1999-02       Impact factor: 20.808

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Journal:  Phys Rev Lett       Date:  1986-03-03       Impact factor: 9.161

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Authors:  Noriyuki Kodera; Daisuke Yamamoto; Ryoki Ishikawa; Toshio Ando
Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

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Authors:  M Bezanilla; B Drake; E Nudler; M Kashlev; P K Hansma; H G Hansma
Journal:  Biophys J       Date:  1994-12       Impact factor: 4.033

7.  Visualization of mobility by atomic force microscopy.

Authors:  Toshio Ando; Noriyuki Kodera
Journal:  Methods Mol Biol       Date:  2012

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Authors:  M Guthold; M Bezanilla; D A Erie; B Jenkins; H G Hansma; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-20       Impact factor: 11.205

Review 9.  Imaging of nucleic acids with atomic force microscopy.

Authors:  Yuri L Lyubchenko; Luda S Shlyakhtenko; Toshio Ando
Journal:  Methods       Date:  2011-02-16       Impact factor: 3.608

10.  AFM for analysis of structure and dynamics of DNA and protein-DNA complexes.

Authors:  Yuri L Lyubchenko; Luda S Shlyakhtenko
Journal:  Methods       Date:  2008-10-07       Impact factor: 3.608

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  7 in total

1.  High-speed atomic force microscopy directly visualizes conformational dynamics of the HIV Vif protein in complex with three host proteins.

Authors:  Yangang Pan; Luda S Shlyakhtenko; Yuri L Lyubchenko
Journal:  J Biol Chem       Date:  2020-06-24       Impact factor: 5.157

2.  The International Society of RNA Nanotechnology and Nanomedicine (ISRNN): The Present and Future of the Burgeoning Field.

Authors:  Morgan Chandler; Brittany Johnson; Emil Khisamutdinov; Marina A Dobrovolskaia; Joanna Sztuba-Solinska; Aliasger K Salem; Koen Breyne; Roger Chammas; Nils G Walter; Lydia M Contreras; Peixuan Guo; Kirill A Afonin
Journal:  ACS Nano       Date:  2021-10-22       Impact factor: 18.027

3.  Quantifying epigenetic modulation of nucleosome breathing by high-throughput AFM imaging.

Authors:  Sebastian F Konrad; Willem Vanderlinden; Jan Lipfert
Journal:  Biophys J       Date:  2022-01-20       Impact factor: 4.033

4.  Restriction of RecG translocation by DNA mispairing.

Authors:  Zhiqiang Sun; Yaqing Wang; Mohtadin Hashemi; Yuri L Lyubchenko
Journal:  Biochim Biophys Acta Gen Subj       Date:  2021-09-11       Impact factor: 3.770

Review 5.  Atomic Force Microscopy Meets Biophysics, Bioengineering, Chemistry, and Materials Science.

Authors:  José L Toca-Herrera
Journal:  ChemSusChem       Date:  2019-01-22       Impact factor: 8.928

6.  Three-Way DNA Junction as an End Label for DNA in Atomic Force Microscopy Studies.

Authors:  Zhiqiang Sun; Tommy Stormberg; Shaun Filliaux; Yuri L Lyubchenko
Journal:  Int J Mol Sci       Date:  2022-09-27       Impact factor: 6.208

7.  Interaction of Aβ42 with Membranes Triggers the Self-Assembly into Oligomers.

Authors:  Siddhartha Banerjee; Mohtadin Hashemi; Karen Zagorski; Yuri L Lyubchenko
Journal:  Int J Mol Sci       Date:  2020-02-08       Impact factor: 5.923

  7 in total

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