Literature DB >> 28761003

Multiple PPR protein interactions are involved in the RNA editing system in Arabidopsis mitochondria and plastids.

Nuria Andrés-Colás1, Qiang Zhu1, Mizuki Takenaka2, Bert De Rybel3,4,5, Dolf Weijers3, Dominique Van Der Straeten6.   

Abstract

Recent identification of several different types of RNA editing factors in plant organelles suggests complex RNA editosomes within which each factor has a different task. However, the precise protein interactions between the different editing factors are still poorly understood. In this paper, we show that the E+-type pentatricopeptide repeat (PPR) protein SLO2, which lacks a C-terminal cytidine deaminase-like DYW domain, interacts in vivo with the DYW-type PPR protein DYW2 and the P-type PPR protein NUWA in mitochondria, and that the latter enhances the interaction of the former ones. These results may reflect a protein scaffold or complex stabilization role of NUWA between E+-type PPR and DYW2 proteins. Interestingly, DYW2 and NUWA also interact in chloroplasts, and DYW2-GFP overexpressing lines show broad editing defects in both organelles, with predominant specificity for sites edited by E+-type PPR proteins. The latter suggests a coordinated regulation of organellar multiple site editing through DYW2, which probably provides the deaminase activity to E+ editosomes.

Entities:  

Keywords:  DYW2; NUWA; PPR; RNA editing; SLO2

Mesh:

Substances:

Year:  2017        PMID: 28761003      PMCID: PMC5565447          DOI: 10.1073/pnas.1705815114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants.

Authors:  Brook K Nelson; Xue Cai; Andreas Nebenführ
Journal:  Plant J       Date:  2007-07-30       Impact factor: 6.417

2.  In Vivo Identification of Plant Protein Complexes Using IP-MS/MS.

Authors:  Jos R Wendrich; Sjef Boeren; Barbara K Möller; Dolf Weijers; Bert De Rybel
Journal:  Methods Mol Biol       Date:  2017

3.  SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome.

Authors:  Cornelia M Hooper; Sandra K Tanz; Ian R Castleden; Michael A Vacher; Ian D Small; A Harvey Millar
Journal:  Bioinformatics       Date:  2014-08-22       Impact factor: 6.937

4.  Arabidopsis ABERRANT PEROXISOME MORPHOLOGY9 is a peroxin that recruits the PEX1-PEX6 complex to peroxisomes.

Authors:  Shino Goto; Shoji Mano; Chihiro Nakamori; Mikio Nishimura
Journal:  Plant Cell       Date:  2011-04-12       Impact factor: 11.277

5.  Identification of GRY-RBP as an apolipoprotein B RNA-binding protein that interacts with both apobec-1 and apobec-1 complementation factor to modulate C to U editing.

Authors:  V Blanc; N Navaratnam; J O Henderson; S Anant; S Kennedy; A Jarmuz; J Scott; N O Davidson
Journal:  J Biol Chem       Date:  2000-12-27       Impact factor: 5.157

6.  SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism.

Authors:  Qiang Zhu; Jasper Dugardeyn; Chunyi Zhang; Mizuki Takenaka; Kristina Kühn; Christian Craddock; Jan Smalle; Michael Karampelias; Jurgen Denecke; Janny Peters; Tom Gerats; Axel Brennicke; Peter Eastmond; Etienne H Meyer; Dominique Van Der Straeten
Journal:  Plant J       Date:  2012-06-25       Impact factor: 6.417

7.  An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize.

Authors:  Tao Sun; Arnaud Germain; Ludovic Giloteaux; Kamel Hammani; Alice Barkan; Maureen R Hanson; Stéphane Bentolila
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-04       Impact factor: 11.205

8.  Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.

Authors:  Claire Lurin; Charles Andrés; Sébastien Aubourg; Mohammed Bellaoui; Frédérique Bitton; Clémence Bruyère; Michel Caboche; Cédrig Debast; José Gualberto; Beate Hoffmann; Alain Lecharny; Monique Le Ret; Marie-Laure Martin-Magniette; Hakim Mireau; Nemo Peeters; Jean-Pierre Renou; Boris Szurek; Ludivine Taconnat; Ian Small
Journal:  Plant Cell       Date:  2004-07-21       Impact factor: 11.277

9.  Mitochondrial enzymes are protected from stress-induced aggregation by mitochondrial chaperones and the Pim1/LON protease.

Authors:  Tom Bender; Ilka Lewrenz; Sebastian Franken; Catherina Baitzel; Wolfgang Voos
Journal:  Mol Biol Cell       Date:  2011-01-05       Impact factor: 4.138

10.  SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations.

Authors:  Cornelia M Hooper; Ian R Castleden; Sandra K Tanz; Nader Aryamanesh; A Harvey Millar
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

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  29 in total

1.  An RNA Chaperone-Like Protein Plays Critical Roles in Chloroplast mRNA Stability and Translation in Arabidopsis and Maize.

Authors:  Jingjing Jiang; Xin Chai; Nikolay Manavski; Rosalind Williams-Carrier; Baoye He; Andreas Brachmann; Daili Ji; Min Ouyang; Yini Liu; Alice Barkan; Jörg Meurer; Lixin Zhang; Wei Chi
Journal:  Plant Cell       Date:  2019-04-08       Impact factor: 11.277

2.  Complexome Profiling Reveals Association of PPR Proteins with Ribosomes in the Mitochondria of Plants.

Authors:  Nils Rugen; Henryk Straube; Linda E Franken; Hans-Peter Braun; Holger Eubel
Journal:  Mol Cell Proteomics       Date:  2019-04-25       Impact factor: 5.911

Review 3.  Molecular and Functional Diversity of RNA Editing in Plant Mitochondria.

Authors:  Wei Tang; Caroline Luo
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

4.  Control of Retrograde Signaling by Rapid Turnover of GENOMES UNCOUPLED1.

Authors:  Guo-Zhang Wu; Camille Chalvin; Matthijs Hoelscher; Etienne H Meyer; Xu Na Wu; Ralph Bock
Journal:  Plant Physiol       Date:  2018-01-24       Impact factor: 8.340

5.  Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria.

Authors:  Damien Guillaumot; Mauricio Lopez-Obando; Kevin Baudry; Alexandra Avon; Guillem Rigaill; Andéol Falcon de Longevialle; Benjamin Broche; Mizuki Takenaka; Richard Berthomé; Geert De Jaeger; Etienne Delannoy; Claire Lurin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

6.  Transformation of nad7 into the nuclear genome rescues the slow growth3 mutant in Arabidopsis.

Authors:  Wei-Yu Hsieh; Sang-Chu Lin; Ming-Hsiun Hsieh
Journal:  RNA Biol       Date:  2018-11-18       Impact factor: 4.652

7.  One C-to-U RNA Editing Site and Two Independently Evolved Editing Factors: Testing Reciprocal Complementation with DYW-Type PPR Proteins from the Moss Physcomitrium (Physcomitrella) patens and the Flowering Plants Macadamia integrifolia and Arabidopsis.

Authors:  Bastian Oldenkott; Matthias Burger; Anke-Christiane Hein; Anja Jörg; Jennifer Senkler; Hans-Peter Braun; Volker Knoop; Mizuki Takenaka; Mareike Schallenberg-Rüdinger
Journal:  Plant Cell       Date:  2020-07-02       Impact factor: 11.277

8.  Construction of restorer lines and molecular mapping for restorer gene of hau cytoplasmic male sterility in Brassica napus.

Authors:  Chao Wei; Huadong Wang; Shuangping Heng; Jing Wen; Bin Yi; Chaozhi Ma; Jinxing Tu; Jinxiong Shen; Tingdong Fu
Journal:  Theor Appl Genet       Date:  2019-06-04       Impact factor: 5.699

9.  The dual-targeted RNA editing factor AEF1 is universally conserved among angiosperms and reveals only minor adaptations upon loss of its chloroplast or its mitochondrial target.

Authors:  Anke Hein; Sarah Brenner; Monika Polsakiewicz; Volker Knoop
Journal:  Plant Mol Biol       Date:  2019-12-03       Impact factor: 4.076

10.  A synthetic RNA editing factor edits its target site in chloroplasts and bacteria.

Authors:  Santana Royan; Bernard Gutmann; Catherine Colas des Francs-Small; Suvi Honkanen; Jason Schmidberger; Ashley Soet; Yueming Kelly Sun; Lilian Vincis Pereira Sanglard; Charles S Bond; Ian Small
Journal:  Commun Biol       Date:  2021-05-10
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