Literature DB >> 32616665

One C-to-U RNA Editing Site and Two Independently Evolved Editing Factors: Testing Reciprocal Complementation with DYW-Type PPR Proteins from the Moss Physcomitrium (Physcomitrella) patens and the Flowering Plants Macadamia integrifolia and Arabidopsis.

Bastian Oldenkott1, Matthias Burger2, Anke-Christiane Hein1, Anja Jörg2, Jennifer Senkler3, Hans-Peter Braun3, Volker Knoop1, Mizuki Takenaka2,4, Mareike Schallenberg-Rüdinger5.   

Abstract

Cytidine-to-uridine RNA editing is a posttranscriptional process in plant organelles, mediated by specific pentatricopeptide repeat (PPR) proteins. In angiosperms, hundreds of sites undergo RNA editing. By contrast, only 13 sites are edited in the moss Physcomitrium (Physcomitrella) patens Some are conserved between the two species, like the mitochondrial editing site nad5eU598RC. The PPR proteins assigned to this editing site are known in both species: the DYW-type PPR protein PPR79 in P. patens and the E+-type PPR protein CWM1 in Arabidopsis (Arabidopsis thaliana). CWM1 also edits sites ccmCeU463RC, ccmBeU428SL, and nad5eU609VV. Here, we reciprocally expressed the P. patens and Arabidopsis editing factors in the respective other genetic environment. Surprisingly, the P. patens editing factor edited all target sites when expressed in the Arabidopsis cwm1 mutant background, even when carboxy-terminally truncated. Conversely, neither Arabidopsis CWM1 nor CWM1-PPR79 chimeras restored editing in P. patens ppr79 knockout plants. A CWM1-like PPR protein from the early diverging angiosperm macadamia (Macadamia integrifolia) features a complete DYW domain and fully rescued editing of nad5eU598RC when expressed in P. patens. We conclude that (1) the independently evolved P. patens editing factor PPR79 faithfully operates in the more complex Arabidopsis editing system, (2) truncated PPR79 recruits catalytic DYW domains in trans when expressed in Arabidopsis, and (3) the macadamia CWM1-like protein retains the capacity to work in the less complex P. patens editing environment.
© 2020 American Society of Plant Biologists. All rights reserved.

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Year:  2020        PMID: 32616665      PMCID: PMC7474288          DOI: 10.1105/tpc.20.00311

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  117 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  The PPR-DYW proteins are required for RNA editing of rps14, cox1 and nad5 transcripts in Physcomitrella patens mitochondria.

Authors:  Masato Uchida; Shotaro Ohtani; Mizuho Ichinose; Chieko Sugita; Mamoru Sugita
Journal:  FEBS Lett       Date:  2011-06-23       Impact factor: 4.124

3.  A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions.

Authors:  R Higuchi; B Krummel; R K Saiki
Journal:  Nucleic Acids Res       Date:  1988-08-11       Impact factor: 16.971

4.  The E domain of CRR2 participates in sequence-specific recognition of RNA in plastids.

Authors:  Hannes Ruwe; Bernard Gutmann; Christian Schmitz-Linneweber; Ian Small; Peter Kindgren
Journal:  New Phytol       Date:  2018-12-06       Impact factor: 10.151

5.  RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs.

Authors:  P Giegé; A Brennicke
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

6.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

7.  Internal architecture of mitochondrial complex I from Arabidopsis thaliana.

Authors:  Jennifer Klodmann; Stephanie Sunderhaus; Manfred Nimtz; Lothar Jänsch; Hans-Peter Braun
Journal:  Plant Cell       Date:  2010-03-02       Impact factor: 11.277

8.  A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.

Authors:  Kamel Hammani; Kenji Okuda; Sandra K Tanz; Anne-Laure Chateigner-Boutin; Toshiharu Shikanai; Ian Small
Journal:  Plant Cell       Date:  2009-11-24       Impact factor: 11.277

9.  RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal.

Authors:  Mareike Rüdinger; Helena T Funk; Stefan A Rensing; Uwe G Maier; Volker Knoop
Journal:  Mol Genet Genomics       Date:  2009-01-24       Impact factor: 3.291

10.  The Pentatricopeptide Repeat Proteins TANG2 and ORGANELLE TRANSCRIPT PROCESSING439 Are Involved in the Splicing of the Multipartite nad5 Transcript Encoding a Subunit of Mitochondrial Complex I.

Authors:  Catherine Colas des Francs-Small; Andéol Falcon de Longevialle; Yunhai Li; Elizabeth Lowe; Sandra K Tanz; Caroline Smith; Michael W Bevan; Ian Small
Journal:  Plant Physiol       Date:  2014-06-23       Impact factor: 8.340

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  4 in total

1.  Plant (RNA) Editors: Testing for Conservation in RNA Editing in Moss and Angiosperms.

Authors:  Patrice A Salomé
Journal:  Plant Cell       Date:  2020-07-02       Impact factor: 11.277

Review 2.  Engineering the plastid and mitochondrial genomes of flowering plants.

Authors:  Pal Maliga
Journal:  Nat Plants       Date:  2022-08-29       Impact factor: 17.352

3.  Inactivation of mitochondrial complex I stimulates chloroplast ATPase in Physcomitrium patens.

Authors:  Marco Mellon; Mattia Storti; Antoni M Vera-Vives; David M Kramer; Alessandro Alboresi; Tomas Morosinotto
Journal:  Plant Physiol       Date:  2021-10-05       Impact factor: 8.005

Review 4.  Advancing organelle genome transformation and editing for crop improvement.

Authors:  Shengchun Li; Ling Chang; Jiang Zhang
Journal:  Plant Commun       Date:  2021-01-04
  4 in total

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