Literature DB >> 28736447

Prokaryotic Argonaute proteins: novel genome-editing tools?

Jorrit W Hegge1, Daan C Swarts2, John van der Oost1.   

Abstract

Argonaute proteins constitute a highly diverse family of nucleic acid-guided proteins. They were first discovered in eukaryotes as key proteins in RNA interference systems, but homologous prokaryotic Argonaute proteins (pAgos) have also been found in archaea and bacteria. In this Progress article, we focus on long pAgo variants, a class of pAgos that are involved in nucleic acid-guided host defence against invading nucleic acids, and discuss the potential of pAgos in genome editing.

Mesh：

Substances：

Year:  2017        PMID： 28736447     DOI： 10.1038/nrmicro.2017.73

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN： 1740-1526            Impact factor:   60.633


  43 in total

Review 1.  RNA interference.

Authors:  Gregory J Hannon
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage.

Authors:  Yu-Ren Yuan; Yi Pei; Jin-Biao Ma; Vitaly Kuryavyi; Maria Zhadina; Gunter Meister; Hong-Ying Chen; Zbigniew Dauter; Thomas Tuschl; Dinshaw J Patel
Journal:  Mol Cell       Date:  2005-08-05       Impact factor: 17.970

3.  Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.

Authors:  Gang Sheng; Hongtu Zhao; Jiuyu Wang; Yu Rao; Wenwen Tian; Daan C Swarts; John van der Oost; Dinshaw J Patel; Yanli Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-27       Impact factor: 11.205

4.  Single-molecule FRET supports the two-state model of Argonaute action.

Authors:  Adrian Zander; Phil Holzmeister; Daniel Klose; Philip Tinnefeld; Dina Grohmann
Journal:  RNA Biol       Date:  2013-12-20       Impact factor: 4.652

5.  DNA-guided DNA interference by a prokaryotic Argonaute.

Authors:  Daan C Swarts; Matthijs M Jore; Edze R Westra; Yifan Zhu; Jorijn H Janssen; Ambrosius P Snijders; Yanli Wang; Dinshaw J Patel; José Berenguer; Stan J J Brouns; John van der Oost
Journal:  Nature       Date:  2014-02-16       Impact factor: 49.962

6.  Autonomous Generation and Loading of DNA Guides by Bacterial Argonaute.

Authors:  Daan C Swarts; Malwina Szczepaniak; Gang Sheng; Stanley D Chandradoss; Yifan Zhu; Elizabeth M Timmers; Yong Zhang; Hongtu Zhao; Jizhong Lou; Yanli Wang; Chirlmin Joo; John van der Oost
Journal:  Mol Cell       Date:  2017-03-02       Impact factor: 17.970

7.  Effects of Argonaute on Gene Expression in Thermus thermophilus.

Authors:  Daan C Swarts; Jasper J Koehorst; Edze R Westra; Peter J Schaap; John van der Oost
Journal:  PLoS One       Date:  2015-04-22       Impact factor: 3.240

8.  NgAgo-based fabp11a gene knockdown causes eye developmental defects in zebrafish.

Authors:  Jialing Qi; Zhangji Dong; Yunwei Shi; Xin Wang; Yinyin Qin; Yongming Wang; Dong Liu
Journal:  Cell Res       Date:  2016-11-11       Impact factor: 25.617

9.  No evidence of genome editing activity from Natronobacterium gregoryi Argonaute (NgAgo) in human cells.

Authors:  Parisa Javidi-Parsijani; Guoguang Niu; Meghan Davis; Pin Lu; Anthony Atala; Baisong Lu
Journal:  PLoS One       Date:  2017-05-11       Impact factor: 3.240

10.  Two novel PIWI families: roles in inter-genomic conflicts in bacteria and Mediator-dependent modulation of transcription in eukaryotes.

Authors:  A Maxwell Burroughs; Lakshminarayan M Iyer; L Aravind
Journal:  Biol Direct       Date:  2013-06-08       Impact factor: 4.540
View more
  45 in total

1.  Recent advances of genome editing and related technologies in China.

Authors:  Wen Sun; Haoyi Wang
Journal:  Gene Ther       Date:  2020-08-03       Impact factor: 5.250

2.  Genome-wide DNA sampling by Ago nuclease from the cyanobacterium Synechococcus elongatus.

Authors:  Anna Olina; Anton Kuzmenko; Maria Ninova; Alexei A Aravin; Andrey Kulbachinskiy; Daria Esyunina
Journal:  RNA Biol       Date:  2020-02-16       Impact factor: 4.652

3.  DNA-guided DNA cleavage at moderate temperatures by Clostridium butyricum Argonaute.

Authors:  Jorrit W Hegge; Daan C Swarts; Stanley D Chandradoss; Tao Ju Cui; Jeroen Kneppers; Martin Jinek; Chirlmin Joo; John van der Oost
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

4.  Zebrafish Embryonic Slow Muscle Is a Rapid System for Genetic Analysis of Sarcomere Organization by CRISPR/Cas9, but Not NgAgo.

Authors:  Mengxin Cai; Yufeng Si; Jianshe Zhang; Zhenjun Tian; Shaojun Du
Journal:  Mar Biotechnol (NY)       Date:  2018-01-27       Impact factor: 3.619

5.  Two symmetric arginine residues play distinct roles in Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.

Authors:  Jinping Lei; Gang Sheng; Peter Pak-Hang Cheung; Shenglong Wang; Yu Li; Xin Gao; Yingkai Zhang; Yanli Wang; Xuhui Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-27       Impact factor: 11.205

Review 6.  The arms race between bacteria and their phage foes.

Authors:  Hannah G Hampton; Bridget N J Watson; Peter C Fineran
Journal:  Nature       Date:  2020-01-15       Impact factor: 49.962

Review 7.  Argonaute proteins: structures and their endonuclease activity.

Authors:  Shujuan Jin; Jian Zhan; Yaoqi Zhou
Journal:  Mol Biol Rep       Date:  2021-06-11       Impact factor: 2.316

Review 8.  Completing the canvas: advances and challenges for DNA-PAINT super-resolution imaging.

Authors:  Raman van Wee; Mike Filius; Chirlmin Joo
Journal:  Trends Biochem Sci       Date:  2021-07-08       Impact factor: 13.807

9.  Highly specific enrichment of rare nucleic acid fractions using Thermus thermophilus argonaute with applications in cancer diagnostics.

Authors:  Jinzhao Song; Jorrit W Hegge; Michael G Mauk; Junman Chen; Jacob E Till; Neha Bhagwat; Lotte T Azink; Jing Peng; Moen Sen; Jazmine Mays; Erica L Carpenter; John van der Oost; Haim H Bau
Journal:  Nucleic Acids Res       Date:  2020-02-28       Impact factor: 16.971

Review 10.  AGO unchained: Canonical and non-canonical roles of Argonaute proteins in mammals.

Authors:  Laura Sala; Srividya Chandrasekhar; Joana A Vidigal
Journal:  Front Biosci (Landmark Ed)       Date:  2020-01-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.