Literature DB >> 34247944

Completing the canvas: advances and challenges for DNA-PAINT super-resolution imaging.

Raman van Wee1, Mike Filius1, Chirlmin Joo2.   

Abstract

Single-molecule localization microscopy (SMLM) is a potent tool to examine biological systems with unprecedented resolution, enabling the investigation of increasingly smaller structures. At the forefront of these developments is DNA-based point accumulation for imaging in nanoscale topography (DNA-PAINT), which exploits the stochastic and transient binding of fluorescently labeled DNA probes. In its early stages the implementation of DNA-PAINT was burdened by low-throughput, excessive acquisition time, and difficult integration with live-cell imaging. However, recent advances are addressing these challenges and expanding the range of applications of DNA-PAINT. We review the current state of the art of DNA-PAINT in light of these advances and contemplate what further developments remain indispensable to realize live-cell imaging.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DNA-PAINT; acquisition speed; live-cell imaging; multiplexing; single-molecule localization microscopy; super-resolution microscopy

Mesh:

Substances:

Year:  2021        PMID: 34247944      PMCID: PMC7612686          DOI: 10.1016/j.tibs.2021.05.010

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  76 in total

1.  Correlative Single-Molecule FRET and DNA-PAINT Imaging.

Authors:  Nina S Deußner-Helfmann; Alexander Auer; Maximilian T Strauss; Sebastian Malkusch; Marina S Dietz; Hans-Dieter Barth; Ralf Jungmann; Mike Heilemann
Journal:  Nano Lett       Date:  2018-06-29       Impact factor: 11.189

2.  Deep learning massively accelerates super-resolution localization microscopy.

Authors:  Wei Ouyang; Andrey Aristov; Mickaël Lelek; Xian Hao; Christophe Zimmer
Journal:  Nat Biotechnol       Date:  2018-04-16       Impact factor: 54.908

3.  Profiling of Exosomal Biomarkers for Accurate Cancer Identification: Combining DNA-PAINT with Machine- Learning-Based Classification.

Authors:  Chen Chen; Shenfei Zong; Yun Liu; Zhuyuan Wang; Yizhi Zhang; Baoan Chen; Yiping Cui
Journal:  Small       Date:  2019-09-03       Impact factor: 13.281

4.  Live-cell super-resolved PAINT imaging of piconewton cellular traction forces.

Authors:  Joshua M Brockman; Hanquan Su; Aaron T Blanchard; Yuxin Duan; Travis Meyer; M Edward Quach; Roxanne Glazier; Alisina Bazrafshan; Rachel L Bender; Anna V Kellner; Hiroaki Ogasawara; Rong Ma; Florian Schueder; Brian G Petrich; Ralf Jungmann; Renhao Li; Alexa L Mattheyses; Yonggang Ke; Khalid Salaita
Journal:  Nat Methods       Date:  2020-09-14       Impact factor: 28.547

5.  124-Color Super-resolution Imaging by Engineering DNA-PAINT Blinking Kinetics.

Authors:  Orsolya K Wade; Johannes B Woehrstein; Philipp C Nickels; Sebastian Strauss; Florian Stehr; Johannes Stein; Florian Schueder; Maximilian T Strauss; Mahipal Ganji; Joerg Schnitzbauer; Heinrich Grabmayr; Peng Yin; Petra Schwille; Ralf Jungmann
Journal:  Nano Lett       Date:  2019-03-13       Impact factor: 11.189

6.  Super-resolution imaging and estimation of protein copy numbers at single synapses with DNA-point accumulation for imaging in nanoscale topography.

Authors:  Carolin Böger; Anne-Sophie Hafner; Thomas Schlichthärle; Maximilian T Strauss; Sebastian Malkusch; Ulrike Endesfelder; Ralf Jungmann; Erin M Schuman; Mike Heilemann
Journal:  Neurophotonics       Date:  2019-08-21       Impact factor: 3.593

7.  Photo-Induced Depletion of Binding Sites in DNA-PAINT Microscopy.

Authors:  Philipp Blumhardt; Johannes Stein; Jonas Mücksch; Florian Stehr; Julian Bauer; Ralf Jungmann; Petra Schwille
Journal:  Molecules       Date:  2018-11-30       Impact factor: 4.411

Review 8.  Super-resolution Microscopy with Single Molecules in Biology and Beyond-Essentials, Current Trends, and Future Challenges.

Authors:  Leonhard Möckl; W E Moerner
Journal:  J Am Chem Soc       Date:  2020-10-09       Impact factor: 15.419

9.  Site-Specific Labeling of Affimers for DNA-PAINT Microscopy.

Authors:  Thomas Schlichthaerle; Alexandra S Eklund; Florian Schueder; Maximilian T Strauss; Christian Tiede; Alistair Curd; Jonas Ries; Michelle Peckham; Darren C Tomlinson; Ralf Jungmann
Journal:  Angew Chem Int Ed Engl       Date:  2018-07-15       Impact factor: 15.336

10.  Nano-scale alignment of proteins on a flexible DNA backbone.

Authors:  Tatsuya Nojima; Hiroki Konno; Noriyuki Kodera; Kohji Seio; Hideki Taguchi; Masasuke Yoshida
Journal:  PLoS One       Date:  2012-12-26       Impact factor: 3.240

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  1 in total

Review 1.  Fluorescent Nanoparticles for Super-Resolution Imaging.

Authors:  Wei Li; Gabriele S Kaminski Schierle; Bingfu Lei; Yingliang Liu; Clemens F Kaminski
Journal:  Chem Rev       Date:  2022-06-27       Impact factor: 72.087

  1 in total

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