Literature DB >> 34117606

Argonaute proteins: structures and their endonuclease activity.

Shujuan Jin1, Jian Zhan2, Yaoqi Zhou3,4,5.   

Abstract

Argonaute proteins are highly conserved and widely expressed in almost all organisms. They not only play a critical role in the biogenesis of small RNAs but also defend against invading nucleic acids via small RNA or DNA-mediated gene silencing pathways. One functional mechanism of Argonaute proteins is acting as a nucleic-acid-guided endonuclease, which can cleave targets complementary to DNA or RNA guides. The cleavage then leads to translational silencing directly or indirectly by recruiting additional silencing proteins. Here, we summarized the latest research progress in structural and biological studies of Argonaute proteins and pointed out their potential applications in the field of gene editing.

Entities:  

Keywords:  Argonaute; Endonuclease; Guide; MID domain; PIWI domain

Mesh:

Substances:

Year:  2021        PMID: 34117606     DOI: 10.1007/s11033-021-06476-w

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  97 in total

1.  The rde-1 gene, RNA interference, and transposon silencing in C. elegans.

Authors:  H Tabara; M Sarkissian; W G Kelly; J Fleenor; A Grishok; L Timmons; A Fire; C C Mello
Journal:  Cell       Date:  1999-10-15       Impact factor: 41.582

2.  Crystal structure of Argonaute and its implications for RISC slicer activity.

Authors:  Ji-Joon Song; Stephanie K Smith; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

Review 3.  Argonaute proteins: key players in RNA silencing.

Authors:  Gyorgy Hutvagner; Martin J Simard
Journal:  Nat Rev Mol Cell Biol       Date:  2008-01       Impact factor: 94.444

4.  Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage.

Authors:  Yu-Ren Yuan; Yi Pei; Jin-Biao Ma; Vitaly Kuryavyi; Maria Zhadina; Gunter Meister; Hong-Ying Chen; Zbigniew Dauter; Thomas Tuschl; Dinshaw J Patel
Journal:  Mol Cell       Date:  2005-08-05       Impact factor: 17.970

Review 5.  Argonaute proteins: mediators of RNA silencing.

Authors:  Lasse Peters; Gunter Meister
Journal:  Mol Cell       Date:  2007-06-08       Impact factor: 17.970

6.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

Review 7.  Prokaryotic Argonaute proteins: novel genome-editing tools?

Authors:  Jorrit W Hegge; Daan C Swarts; John van der Oost
Journal:  Nat Rev Microbiol       Date:  2017-07-24       Impact factor: 60.633

Review 8.  Origins and evolution of eukaryotic RNA interference.

Authors:  Svetlana A Shabalina; Eugene V Koonin
Journal:  Trends Ecol Evol       Date:  2008-08-18       Impact factor: 17.712

Review 9.  The evolutionary journey of Argonaute proteins.

Authors:  Daan C Swarts; Kira Makarova; Yanli Wang; Kotaro Nakanishi; René F Ketting; Eugene V Koonin; Dinshaw J Patel; John van der Oost
Journal:  Nat Struct Mol Biol       Date:  2014-09       Impact factor: 15.369

Review 10.  DNA interference and beyond: structure and functions of prokaryotic Argonaute proteins.

Authors:  Lidiya Lisitskaya; Alexei A Aravin; Andrey Kulbachinskiy
Journal:  Nat Commun       Date:  2018-12-04       Impact factor: 14.919

View more
  5 in total

1.  Melon shoot organization 1, encoding an AGRONAUTE7 protein, plays a crucial role in plant development.

Authors:  Jian Ma; Congcong Li; Peng Gao; Yanhong Qiu; Mei Zong; Huijun Zhang; Jianshe Wang
Journal:  Theor Appl Genet       Date:  2022-07-08       Impact factor: 5.574

2.  A programmable pAgo nuclease with RNA target preference from the psychrotolerant bacterium Mucilaginibacter paludis.

Authors:  Wenqiang Li; Yang Liu; Ruyi He; Longyu Wang; Yaping Wang; Wanting Zeng; Zhiwei Zhang; Fei Wang; Lixin Ma
Journal:  Nucleic Acids Res       Date:  2022-05-20       Impact factor: 16.971

Review 3.  DNA and RNA Binding Proteins: From Motifs to Roles in Cancer.

Authors:  Ondrej Bonczek; Lixiao Wang; Sivakumar Vadivel Gnanasundram; Sa Chen; Lucia Haronikova; Filip Zavadil-Kokas; Borivoj Vojtesek
Journal:  Int J Mol Sci       Date:  2022-08-18       Impact factor: 6.208

4.  AGODB: a comprehensive domain annotation database of argonaute proteins.

Authors:  Bowen Li; Shanshan Yang; Jinjin Long; Xue Chen; Qianyue Zhang; Lin Ning; Bifang He; Heng Chen; Jian Huang
Journal:  Database (Oxford)       Date:  2022-09-07       Impact factor: 4.462

5.  A detailed protocol for RNA cleavage assay in sympathetic neurons.

Authors:  Catia Andreassi; Antonella Riccio
Journal:  STAR Protoc       Date:  2021-12-11
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.