Literature DB >> 28683310

Post-termination Ribosome Intermediate Acts as the Gateway to Ribosome Recycling.

Arjun Prabhakar1, Mark C Capece2, Alexey Petrov3, Junhong Choi4, Joseph D Puglisi5.   

Abstract

During termination of translation, the nascent peptide is first released from the ribosome, which must be subsequently disassembled into subunits in a process known as ribosome recycling. In bacteria, termination and recycling are mediated by the translation factors RF, RRF, EF-G, and IF3, but their precise roles have remained unclear. Here, we use single-molecule fluorescence to track the conformation and composition of the ribosome in real time during termination and recycling. Our results show that peptide release by RF induces a rotated ribosomal conformation. RRF binds to this rotated intermediate to form the substrate for EF-G that, in turn, catalyzes GTP-dependent subunit disassembly. After the 50S subunit departs, IF3 releases the deacylated tRNA from the 30S subunit, thus preventing reassembly of the 70S ribosome. Our findings reveal the post-termination rotated state as the crucial intermediate in the transition from termination to recycling.
Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  EF-G; IF3; RRF; recycling; release factor; ribosome; single-molecule fluorescence; stop codon; termination; translation

Mesh:

Substances:

Year:  2017        PMID: 28683310      PMCID: PMC5555083          DOI: 10.1016/j.celrep.2017.06.028

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  50 in total

1.  Release of peptide promoted by the GGQ motif of class 1 release factors regulates the GTPase activity of RF3.

Authors:  Andrei V Zavialov; Liliana Mora; Richard H Buckingham; Måns Ehrenberg
Journal:  Mol Cell       Date:  2002-10       Impact factor: 17.970

2.  Release factor RF3 abolishes competition between release factor RF1 and ribosome recycling factor (RRF) for a ribosome binding site.

Authors:  M Y Pavlov; D V Freistroffer; V Heurgué-Hamard; R H Buckingham; M Ehrenberg
Journal:  J Mol Biol       Date:  1997-10-24       Impact factor: 5.469

3.  Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G.

Authors:  Andrey V Zavialov; Vasili V Hauryliuk; Måns Ehrenberg
Journal:  Mol Cell       Date:  2005-06-10       Impact factor: 17.970

4.  High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence.

Authors:  Jin Chen; Ravindra V Dalal; Alexey N Petrov; Albert Tsai; Seán E O'Leary; Karen Chapin; Janice Cheng; Mark Ewan; Pei-Lin Hsiung; Paul Lundquist; Stephen W Turner; David R Hsu; Joseph D Puglisi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-30       Impact factor: 11.205

5.  Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation.

Authors:  Jingyi Fei; Pallav Kosuri; Daniel D MacDougall; Ruben L Gonzalez
Journal:  Mol Cell       Date:  2008-05-09       Impact factor: 17.970

6.  The role of ribosome recycling factor in dissociation of 70S ribosomes into subunits.

Authors:  Go Hirokawa; Romana M Nijman; V Samuel Raj; Hideko Kaji; Kazuei Igarashi; Akira Kaji
Journal:  RNA       Date:  2005-08       Impact factor: 4.942

7.  GTP hydrolysis by IF2 guides progression of the ribosome into elongation.

Authors:  R Andrew Marshall; Colin Echeverría Aitken; Joseph D Puglisi
Journal:  Mol Cell       Date:  2009-07-10       Impact factor: 17.970

Review 8.  Single-molecule analysis of translational dynamics.

Authors:  Alexey Petrov; Jin Chen; Seán O'Leary; Albert Tsai; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

9.  Phylogenetic distribution of translational GTPases in bacteria.

Authors:  Tõnu Margus; Maido Remm; Tanel Tenson
Journal:  BMC Genomics       Date:  2007-01-10       Impact factor: 3.969

10.  Insights into translational termination from the structure of RF2 bound to the ribosome.

Authors:  Albert Weixlbaumer; Hong Jin; Cajetan Neubauer; Rebecca M Voorhees; Sabine Petry; Ann C Kelley; Venki Ramakrishnan
Journal:  Science       Date:  2008-11-07       Impact factor: 47.728

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  15 in total

Review 1.  Relating Structure and Dynamics in RNA Biology.

Authors:  Kevin P Larsen; Junhong Choi; Arjun Prabhakar; Elisabetta Viani Puglisi; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-07-01       Impact factor: 10.005

2.  N 6-Methyladenosines in mRNAs reduce the accuracy of codon reading by transfer RNAs and peptide release factors.

Authors:  Ka-Weng Ieong; Gabriele Indrisiunaite; Arjun Prabhakar; Joseph D Puglisi; Måns Ehrenberg
Journal:  Nucleic Acids Res       Date:  2021-03-18       Impact factor: 16.971

3.  ArfB can displace mRNA to rescue stalled ribosomes.

Authors:  Christine E Carbone; Gabriel Demo; Rohini Madireddy; Egor Svidritskiy; Andrei A Korostelev
Journal:  Nat Commun       Date:  2020-11-03       Impact factor: 14.919

Review 4.  Single-Molecule Fluorescence Applied to Translation.

Authors:  Arjun Prabhakar; Elisabetta Viani Puglisi; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

Review 5.  Diversity and Similarity of Termination and Ribosome Rescue in Bacterial, Mitochondrial, and Cytoplasmic Translation.

Authors:  Andrei A Korostelev
Journal:  Biochemistry (Mosc)       Date:  2021-09       Impact factor: 2.487

6.  Structural basis for ribosome recycling by RRF and tRNA.

Authors:  Dejian Zhou; Takehito Tanzawa; Jinzhong Lin; Matthieu G Gagnon
Journal:  Nat Struct Mol Biol       Date:  2019-12-23       Impact factor: 18.361

7.  Real-time assembly of ribonucleoprotein complexes on nascent RNA transcripts.

Authors:  Olivier Duss; Galina A Stepanyuk; Annette Grot; Seán E O'Leary; Joseph D Puglisi; James R Williamson
Journal:  Nat Commun       Date:  2018-11-30       Impact factor: 14.919

8.  Compensating Complete Loss of Signal Recognition Particle During Co-translational Protein Targeting by the Translation Speed and Accuracy.

Authors:  Liuqun Zhao; Gang Fu; Yanyan Cui; Zixiang Xu; Tao Cai; Dawei Zhang
Journal:  Front Microbiol       Date:  2021-07-09       Impact factor: 5.640

9.  The hibernating 100S complex is a target of ribosome-recycling factor and elongation factor G in Staphylococcus aureus.

Authors:  Arnab Basu; Kathryn E Shields; Mee-Ngan F Yap
Journal:  J Biol Chem       Date:  2020-03-24       Impact factor: 5.157

10.  Ribosome recycling is not critical for translational coupling in Escherichia coli.

Authors:  Kazuki Saito; Rachel Green; Allen R Buskirk
Journal:  Elife       Date:  2020-09-23       Impact factor: 8.140

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