Literature DB >> 29891562

Single-Molecule Fluorescence Applied to Translation.

Arjun Prabhakar1,2, Elisabetta Viani Puglisi1, Joseph D Puglisi1.   

Abstract

Single-molecule fluorescence methods have illuminated the dynamics of the translational machinery. Structural and bulk biochemical experiments have provided detailed atomic and global mechanistic views of translation, respectively. Single-molecule studies of translation have bridged these views by temporally connecting the conformational and compositional states defined from structural data within the mechanistic framework of translation produced from biochemical studies. Here, we discuss the context for applying different single-molecule fluorescence experiments, and present recent applications to studying prokaryotic and eukaryotic translation. We underscore the power of observing single translating ribosomes to delineate and sort complex mechanistic pathways during initiation and elongation, and discuss future applications of current and improved technologies.
Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2019        PMID: 29891562      PMCID: PMC6314065          DOI: 10.1101/cshperspect.a032714

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  105 in total

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Journal:  Nat Struct Biol       Date:  2000-09

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Review 4.  Mechanisms of elongation on the ribosome: dynamics of a macromolecular machine.

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Journal:  Biochem Soc Trans       Date:  2004-11       Impact factor: 5.407

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Journal:  EMBO J       Date:  1997-07-01       Impact factor: 11.598

Review 8.  Single-molecule analysis of translational dynamics.

Authors:  Alexey Petrov; Jin Chen; Seán O'Leary; Albert Tsai; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

Review 9.  Ribosome dynamics during decoding.

Authors:  Marina V Rodnina; Niels Fischer; Cristina Maracci; Holger Stark
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

10.  Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation.

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Journal:  Cell       Date:  2016-09-22       Impact factor: 41.582

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  8 in total

Review 1.  Toward a Kinetic Understanding of Eukaryotic Translation.

Authors:  Masaaki Sokabe; Christopher S Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

Review 2.  Approaches for measuring the dynamics of RNA-protein interactions.

Authors:  Donny D Licatalosi; Xuan Ye; Eckhard Jankowsky
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-08-20       Impact factor: 9.957

Review 3.  Understanding biochemical processes in the presence of sub-diffusive behavior of biomolecules in solution and living cells.

Authors:  Sujit Basak; Sombuddha Sengupta; Krishnananda Chattopadhyay
Journal:  Biophys Rev       Date:  2019-08-23

4.  mRNA- and factor-driven dynamic variability controls eIF4F-cap recognition for translation initiation.

Authors:  Burak Çetin; Seán E O'Leary
Journal:  Nucleic Acids Res       Date:  2022-08-12       Impact factor: 19.160

5.  Fast and robust two-dimensional inverse Laplace transformation of single-molecule fluorescence lifetime data.

Authors:  Saurabh Talele; John T King
Journal:  Biophys J       Date:  2021-08-28       Impact factor: 3.699

6.  Translation initiation site of mRNA is selected through dynamic interaction with the ribosome.

Authors:  Yi-Lan Chen; Jin-Der Wen
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-23       Impact factor: 12.779

Review 7.  A Ribosomal Perspective on Neuronal Local Protein Synthesis.

Authors:  Sudhriti Ghosh Dastidar; Deepak Nair
Journal:  Front Mol Neurosci       Date:  2022-02-23       Impact factor: 5.639

8.  Direct measurements of mRNA translation kinetics in living cells.

Authors:  Mikhail Metelev; Erik Lundin; Ivan L Volkov; Arvid H Gynnå; Johan Elf; Magnus Johansson
Journal:  Nat Commun       Date:  2022-04-06       Impact factor: 14.919

  8 in total

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