Literature DB >> 28670741

Structural, mutagenic and in silico studies of xyloglucan fucosylation in Arabidopsis thaliana suggest a water-mediated mechanism.

Breeanna R Urbanowicz1, Vivek S Bharadwaj2, Markus Alahuhta2, Maria J Peña1, Vladimir V Lunin2, Yannick J Bomble2, Shuo Wang1, Jeong-Yeh Yang1, Sami T Tuomivaara1, Michael E Himmel2, Kelley W Moremen1, William S York1, Michael F Crowley2.   

Abstract

The mechanistic underpinnings of the complex process of plant polysaccharide biosynthesis are poorly understood, largely because of the resistance of glycosyltransferase (GT) enzymes to structural characterization. In Arabidopsis thaliana, a glycosyl transferase family 37 (GT37) fucosyltransferase 1 (AtFUT1) catalyzes the regiospecific transfer of terminal 1,2-fucosyl residues to xyloglucan side chains - a key step in the biosynthesis of fucosylated sidechains of galactoxyloglucan. We unravel the mechanistic basis for fucosylation by AtFUT1 with a multipronged approach involving protein expression, X-ray crystallography, mutagenesis experiments and molecular simulations. Mammalian cell culture expressions enable the sufficient production of the enzyme for X-ray crystallography, which reveals the structural architecture of AtFUT1 in complex with bound donor and acceptor substrate analogs. The lack of an appropriately positioned active site residue as a catalytic base leads us to propose an atypical water-mediated fucosylation mechanism facilitated by an H-bonded network, which is corroborated by mutagenesis experiments as well as detailed atomistic simulations.
© 2017 The Authors The Plant Journal © 2017 John Wiley & Sons Ltd.

Entities:  

Keywords:  zzm321990Arabidopsis thalianazzm321990; fucosylation; fucosyltransferase; hemicellulose synthesis; reaction mechanism

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Year:  2017        PMID: 28670741      PMCID: PMC5735850          DOI: 10.1111/tpj.13628

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  56 in total

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2.  In silico prediction of proteins related to xyloglucan fucosyltransferases in Solanaceae genomes.

Authors:  Arnaud Lehner; Laurence Menu-Bouaouiche; Flavien Dardelle; François Le Mauff; Azeddine Driouich; Patrice Lerouge; Jean-Claude Mollet
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Review 4.  Biosynthesis of the Plant Cell Wall Matrix Polysaccharide Xyloglucan.

Authors:  Markus Pauly; Kenneth Keegstra
Journal:  Annu Rev Plant Biol       Date:  2016-02-29       Impact factor: 26.379

5.  Mutations in multiple XXT genes of Arabidopsis reveal the complexity of xyloglucan biosynthesis.

Authors:  Olga A Zabotina; Utku Avci; David Cavalier; Sivakumar Pattathil; Yi-Hsiang Chou; Stefan Eberhard; Linda Danhof; Kenneth Keegstra; Michael G Hahn
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9.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

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  18 in total

1.  Molecular Mechanism of Polysaccharide Acetylation by the Arabidopsis Xylan O-acetyltransferase XOAT1.

Authors:  Vladimir V Lunin; Hsin-Tzu Wang; Vivek S Bharadwaj; Markus Alahuhta; Maria J Peña; Jeong-Yeh Yang; Stephanie A Archer-Hartmann; Parastoo Azadi; Michael E Himmel; Kelley W Moremen; William S York; Yannick J Bomble; Breeanna R Urbanowicz
Journal:  Plant Cell       Date:  2020-04-30       Impact factor: 11.277

2.  Automated glycan assembly of galactosylated xyloglucan oligosaccharides and their recognition by plant cell wall glycan-directed antibodies.

Authors:  Pietro Dallabernardina; Colin Ruprecht; Peter J Smith; Michael G Hahn; Breeanna R Urbanowicz; Fabian Pfrengle
Journal:  Org Biomol Chem       Date:  2017-12-06       Impact factor: 3.876

3.  Structure of xyloglucan xylosyltransferase 1 reveals simple steric rules that define biological patterns of xyloglucan polymers.

Authors:  Alan T Culbertson; Jacqueline J Ehrlich; Jun-Yong Choe; Richard B Honzatko; Olga A Zabotina
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-21       Impact factor: 11.205

4.  A two-phase model for the non-processive biosynthesis of homogalacturonan polysaccharides by the GAUT1:GAUT7 complex.

Authors:  Robert A Amos; Sivakumar Pattathil; Jeong-Yeh Yang; Melani A Atmodjo; Breeanna R Urbanowicz; Kelley W Moremen; Debra Mohnen
Journal:  J Biol Chem       Date:  2018-10-16       Impact factor: 5.157

5.  Characterizing human α-1,6-fucosyltransferase (FUT8) substrate specificity and structural similarities with related fucosyltransferases.

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6.  Structural basis of substrate recognition and catalysis by fucosyltransferase 8.

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7.  Heterologous expression of plant glycosyltransferases for biochemistry and structural biology.

Authors:  Pradeep K Prabhakar; Hsin-Tzu Wang; Peter J Smith; Jeong-Yeh Yang; William J Barnes; Maria J Peña; Kelley W Moremen; Breeanna R Urbanowicz
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Review 8.  Emerging structural insights into glycosyltransferase-mediated synthesis of glycans.

Authors:  Kelley W Moremen; Robert S Haltiwanger
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9.  Rational enzyme design for controlled functionalization of acetylated xylan for cell-free polymer biosynthesis.

Authors:  Hsin-Tzu Wang; Vivek S Bharadwaj; Jeong-Yeh Yang; Thomas M Curry; Kelley W Moremen; Yannick J Bomble; Breeanna R Urbanowicz
Journal:  Carbohydr Polym       Date:  2021-08-19       Impact factor: 9.381

Review 10.  Designer biomass for next-generation biorefineries: leveraging recent insights into xylan structure and biosynthesis.

Authors:  Peter J Smith; Hsin-Tzu Wang; William S York; Maria J Peña; Breeanna R Urbanowicz
Journal:  Biotechnol Biofuels       Date:  2017-11-30       Impact factor: 6.040

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