Literature DB >> 25885951

Carbohydrate anomalies in the PDB.

Jon Agirre1, Gideon Davies1, Keith Wilson1, Kevin Cowtan1.   

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Year:  2015        PMID： 25885951     DOI： 10.1038/nchembio.1798

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN： 1552-4450            Impact factor:   15.040


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  5 in total

1.  Data mining the protein data bank: automatic detection and assignment of carbohydrate structures.

Authors:  Thomas Lütteke; Martin Frank; Claus-W von der Lieth
Journal:  Carbohydr Res       Date:  2004-04-02       Impact factor: 2.104

2.  Protein-ligand cocrystal structures: we can do better.

Authors:  Charles H Reynolds
Journal:  ACS Med Chem Lett       Date:  2014-06-02       Impact factor: 4.345

3.  Conformational analyses of the reaction coordinate of glycosidases.

Authors:  Gideon J Davies; Antoni Planas; Carme Rovira
Journal:  Acc Chem Res       Date:  2011-09-16       Impact factor: 22.384

4.  Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank.

Authors:  Robbie P Joosten; Krista Joosten; Serge X Cohen; Gert Vriend; Anastassis Perrakis
Journal:  Bioinformatics       Date:  2011-10-27       Impact factor: 6.937

Review 5.  Dissecting conformational contributions to glycosidase catalysis and inhibition.

Authors:  Gaetano Speciale; Andrew J Thompson; Gideon J Davies; Spencer J Williams
Journal:  Curr Opin Struct Biol       Date:  2014-07-10       Impact factor: 6.809
  5 in total
  32 in total

1.  Privateer: software for the conformational validation of carbohydrate structures.

Authors:  Jon Agirre; Javier Iglesias-Fernández; Carme Rovira; Gideon J Davies; Keith S Wilson; Kevin D Cowtan
Journal:  Nat Struct Mol Biol       Date:  2015-11       Impact factor: 15.369

2.  Erratum: Carbohydrate anomalies in the PDB.

Authors:  Jon Agirre; Gideon Davies; Keith Wilson; Kevin Cowtan
Journal:  Nat Chem Biol       Date:  2015-07       Impact factor: 15.040

Review 3.  Predicting the Structures of Glycans, Glycoproteins, and Their Complexes.

Authors:  Robert J Woods
Journal:  Chem Rev       Date:  2018-08-09       Impact factor: 60.622

4.  Stereoelectronic Effects Impact Glycan Recognition.

Authors:  Caitlin M McMahon; Christine R Isabella; Ian W Windsor; Paul Kosma; Ronald T Raines; Laura L Kiessling
Journal:  J Am Chem Soc       Date:  2020-01-24       Impact factor: 15.419

5.  Structure of the chlorovirus PBCV-1 major capsid glycoprotein determined by combining crystallographic and carbohydrate molecular modeling approaches.

Authors:  Cristina De Castro; Thomas Klose; Immacolata Speciale; Rosa Lanzetta; Antonio Molinaro; James L Van Etten; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-18       Impact factor: 11.205

6.  Vina-Carb: Improving Glycosidic Angles during Carbohydrate Docking.

Authors:  Anita K Nivedha; David F Thieker; Spandana Makeneni; Huimin Hu; Robert J Woods
Journal:  J Chem Theory Comput       Date:  2016-01-19       Impact factor: 6.006

7.  Glycoside Hydrolases Restrict the Side Chain Conformation of Their Substrates To Gain Additional Transition State Stabilization.

Authors:  Jonathan C K Quirke; David Crich
Journal:  J Am Chem Soc       Date:  2020-09-24       Impact factor: 15.419

8.  Structural, mutagenic and in silico studies of xyloglucan fucosylation in Arabidopsis thaliana suggest a water-mediated mechanism.

Authors:  Breeanna R Urbanowicz; Vivek S Bharadwaj; Markus Alahuhta; Maria J Peña; Vladimir V Lunin; Yannick J Bomble; Shuo Wang; Jeong-Yeh Yang; Sami T Tuomivaara; Michael E Himmel; Kelley W Moremen; William S York; Michael F Crowley
Journal:  Plant J       Date:  2017-08-28       Impact factor: 6.417

9.  Side Chain Conformation Restriction in the Catalysis of Glycosidic Bond Formation by Leloir Glycosyltransferases, Glycoside Phosphorylases, and Transglycosidases.

Authors:  Jonathan C K Quirke; David Crich
Journal:  ACS Catal       Date:  2021-04-13       Impact factor: 13.084

10.  Editorial: Structural and Computational Glycobiology - Immunity and Infection.

Authors:  Mark Agostino; Elizabeth Yuriev
Journal:  Front Immunol       Date:  2015-07-14       Impact factor: 7.561
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