Literature DB >> 34560975

Rational enzyme design for controlled functionalization of acetylated xylan for cell-free polymer biosynthesis.

Hsin-Tzu Wang1, Vivek S Bharadwaj2, Jeong-Yeh Yang1, Thomas M Curry1, Kelley W Moremen1, Yannick J Bomble3, Breeanna R Urbanowicz4.   

Abstract

Xylan O-acetyltransferase 1 (XOAT1) is involved in O-acetylating the backbone of hemicellulose xylan. Recent structural analysis of XOAT1 showed two unequal lobes forming a cleft that is predicted to accommodate and position xylan acceptors into proximity with the catalytic triad. Here, we used docking and molecular dynamics simulations to investigate the optimal orientation of xylan in the binding cleft of XOAT1 and identify putative key residues (Gln445 and Arg444 on Minor lobe & Asn312, Met311 and Asp403 on Major lobe) involved in substrate interactions. Site-directed mutagenesis coupled with biochemical analyses revealed the major lobe of XOAT1 is important for xylan binding. Mutation of single key residues yielded XOAT1 variants with various enzymatic efficiencies that are applicable to one-pot synthesis of xylan polymers with different degrees of O-acetylation. Taken together, our results demonstrate the effectiveness of computational modeling in guiding enzyme engineering aimed at modulating xylan and redesigning plant cell walls.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Computational modeling; Enzyme engineering; Enzyme-substrate interaction; One-pot synthesis; Xylan O-acetylation; Xylooligosaccharide

Mesh:

Substances:

Year:  2021        PMID: 34560975      PMCID: PMC8506904          DOI: 10.1016/j.carbpol.2021.118564

Source DB:  PubMed          Journal:  Carbohydr Polym        ISSN: 0144-8617            Impact factor:   9.381


  49 in total

1.  Molecular Mechanism of Polysaccharide Acetylation by the Arabidopsis Xylan O-acetyltransferase XOAT1.

Authors:  Vladimir V Lunin; Hsin-Tzu Wang; Vivek S Bharadwaj; Markus Alahuhta; Maria J Peña; Jeong-Yeh Yang; Stephanie A Archer-Hartmann; Parastoo Azadi; Michael E Himmel; Kelley W Moremen; William S York; Yannick J Bomble; Breeanna R Urbanowicz
Journal:  Plant Cell       Date:  2020-04-30       Impact factor: 11.277

2.  Oligosaccharides as co-encapsulating agents: effect on oral Lactobacillus fermentum survival in a simulated gastrointestinal tract.

Authors:  Ning Liao; Baolong Luo; Jing Gao; Xiaojuan Li; Zhixia Zhao; Yan Zhang; Yongqing Ni; Fengwei Tian
Journal:  Biotechnol Lett       Date:  2018-12-10       Impact factor: 2.461

3.  The Arabidopsis DUF231 domain-containing protein ESK1 mediates 2-O- and 3-O-acetylation of xylosyl residues in xylan.

Authors:  Youxi Yuan; Quincy Teng; Ruiqin Zhong; Zheng-Hua Ye
Journal:  Plant Cell Physiol       Date:  2013-05-09       Impact factor: 4.927

4.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

5.  Loss-of-function mutation of REDUCED WALL ACETYLATION2 in Arabidopsis leads to reduced cell wall acetylation and increased resistance to Botrytis cinerea.

Authors:  Yuzuki Manabe; Majse Nafisi; Yves Verhertbruggen; Caroline Orfila; Sascha Gille; Carsten Rautengarten; Candice Cherk; Susan E Marcus; Shauna Somerville; Markus Pauly; J Paul Knox; Yumiko Sakuragi; Henrik Vibe Scheller
Journal:  Plant Physiol       Date:  2011-01-06       Impact factor: 8.340

6.  Mutations in PMR5 result in powdery mildew resistance and altered cell wall composition.

Authors:  John P Vogel; Theodore K Raab; Chris R Somerville; Shauna C Somerville
Journal:  Plant J       Date:  2004-12       Impact factor: 6.417

7.  Hybrid Aspen Expressing a Carbohydrate Esterase Family 5 Acetyl Xylan Esterase Under Control of a Wood-Specific Promoter Shows Improved Saccharification.

Authors:  Zhao Wang; Prashant Mohan-Anupama Pawar; Marta Derba-Maceluch; Mattias Hedenström; Sun-Li Chong; Maija Tenkanen; Leif J Jönsson; Ewa J Mellerowicz
Journal:  Front Plant Sci       Date:  2020-04-08       Impact factor: 5.753

8.  Xylan Structure and Dynamics in Native Brachypodium Grass Cell Walls Investigated by Solid-State NMR Spectroscopy.

Authors:  Pu Duan; Samuel J Kaser; Jan J Lyczakowski; Pyae Phyo; Theodora Tryfona; Paul Dupree; Mei Hong
Journal:  ACS Omega       Date:  2021-06-03

9.  Lignin-polysaccharide interactions in plant secondary cell walls revealed by solid-state NMR.

Authors:  Xue Kang; Alex Kirui; Malitha C Dickwella Widanage; Frederic Mentink-Vigier; Daniel J Cosgrove; Tuo Wang
Journal:  Nat Commun       Date:  2019-01-21       Impact factor: 14.919

10.  A grass-specific cellulose-xylan interaction dominates in sorghum secondary cell walls.

Authors:  Yu Gao; Andrew S Lipton; Yuuki Wittmer; Dylan T Murray; Jenny C Mortimer
Journal:  Nat Commun       Date:  2020-11-27       Impact factor: 14.919

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  1 in total

1.  Enzymatic Synthesis of Xylan Microparticles with Tunable Morphologies.

Authors:  Peter J Smith; Thomas M Curry; Jeong-Yeh Yang; William J Barnes; Samantha J Ziegler; Ashutosh Mittal; Kelley W Moremen; William S York; Yannick J Bomble; Maria J Peña; Breeanna R Urbanowicz
Journal:  ACS Mater Au       Date:  2022-04-05
  1 in total

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