Literature DB >> 28648379

Targeted Protein Degradation: from Chemical Biology to Drug Discovery.

Philipp M Cromm1, Craig M Crews2.   

Abstract

Traditional pharmaceutical drug discovery is almost exclusively focused on directly controlling protein activity to cure diseases. Modulators of protein activity, especially inhibitors, are developed and applied at high concentration to achieve maximal effects. Thereby, reduced bioavailability and off-target effects can hamper compound efficacy. Nucleic acid-based strategies that control protein function by affecting expression have emerged as an alternative. However, metabolic stability and broad bioavailability represent development hurdles that remain to be overcome for these approaches. More recently, utilizing the cell's own protein destruction machinery for selective degradation of essential drivers of human disorders has opened up a new and exciting area of drug discovery. Small-molecule-induced proteolysis of selected substrates offers the potential of reaching beyond the limitations of the current pharmaceutical paradigm to expand the druggable target space.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  E3 ligase; PROTACs; hydrophobic tagging; protein degradation

Mesh:

Substances:

Year:  2017        PMID: 28648379      PMCID: PMC5610075          DOI: 10.1016/j.chembiol.2017.05.024

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   8.116


  119 in total

1.  Impact of linker length on the activity of PROTACs.

Authors:  Kedra Cyrus; Marie Wehenkel; Eun-Young Choi; Hyeong-Jun Han; Hyosung Lee; Hollie Swanson; Kyung-Bo Kim
Journal:  Mol Biosyst       Date:  2010-10-04

2.  In Vivo Knockdown of Pathogenic Proteins via Specific and Nongenetic Inhibitor of Apoptosis Protein (IAP)-dependent Protein Erasers (SNIPERs).

Authors:  Nobumichi Ohoka; Keiichiro Okuhira; Masahiro Ito; Katsunori Nagai; Norihito Shibata; Takayuki Hattori; Osamu Ujikawa; Kenichiro Shimokawa; Osamu Sano; Ryokichi Koyama; Hisashi Fujita; Mika Teratani; Hirokazu Matsumoto; Yasuhiro Imaeda; Hiroshi Nara; Nobuo Cho; Mikihiko Naito
Journal:  J Biol Chem       Date:  2017-02-02       Impact factor: 5.157

3.  Targeting steroid hormone receptors for ubiquitination and degradation in breast and prostate cancer.

Authors:  A Rodriguez-Gonzalez; K Cyrus; M Salcius; K Kim; C M Crews; R J Deshaies; K M Sakamoto
Journal:  Oncogene       Date:  2008-09-15       Impact factor: 9.867

4.  Are RNAi and miRNA therapeutics truly dead?

Authors:  João Conde; Natalie Artzi
Journal:  Trends Biotechnol       Date:  2015-01-13       Impact factor: 19.536

5.  Chemical biology: Greasy tags for protein removal.

Authors:  Taavi K Neklesa; Craig M Crews
Journal:  Nature       Date:  2012-07-18       Impact factor: 49.962

Review 6.  The increasing complexity of the ubiquitin code.

Authors:  Richard Yau; Michael Rape
Journal:  Nat Cell Biol       Date:  2016-05-27       Impact factor: 28.824

7.  Inhibitor mediated protein degradation.

Authors:  Marcus J C Long; Deviprasad R Gollapalli; Lizbeth Hedstrom
Journal:  Chem Biol       Date:  2012-05-25

8.  Ubiquilin-mediated Small Molecule Inhibition of Mammalian Target of Rapamycin Complex 1 (mTORC1) Signaling.

Authors:  Rory T Coffey; Yuntao Shi; Marcus J C Long; Michael T Marr; Lizbeth Hedstrom
Journal:  J Biol Chem       Date:  2016-01-06       Impact factor: 5.157

9.  AZD3514: a small molecule that modulates androgen receptor signaling and function in vitro and in vivo.

Authors:  Sarah A Loddick; Sarah J Ross; Andrew G Thomason; David M Robinson; Graeme E Walker; Tom P J Dunkley; Sandra R Brave; Nicola Broadbent; Natalie C Stratton; Dawn Trueman; Elizabeth Mouchet; Fadhel S Shaheen; Vivien N Jacobs; Marie Cumberbatch; Joanne Wilson; Rhys D O Jones; Robert H Bradbury; Alfred Rabow; Luke Gaughan; Chris Womack; Simon T Barry; Craig N Robson; Susan E Critchlow; Stephen R Wedge; A Nigel Brooks
Journal:  Mol Cancer Ther       Date:  2013-07-16       Impact factor: 6.261

Review 10.  Recognition and processing of ubiquitin-protein conjugates by the proteasome.

Authors:  Daniel Finley
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

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  92 in total

Review 1.  Methods to identify and optimize small molecules interacting with RNA (SMIRNAs).

Authors:  Andrei Ursu; Simon Vézina-Dawod; Matthew D Disney
Journal:  Drug Discov Today       Date:  2019-07-26       Impact factor: 7.851

2.  A MedChem toolbox for cereblon-directed PROTACs.

Authors:  Christian Steinebach; Izidor Sosič; Stefanie Lindner; Aleša Bricelj; Franziska Kohl; Yuen Lam Dora Ng; Marius Monschke; Karl G Wagner; Jan Krönke; Michael Gütschow
Journal:  Medchemcomm       Date:  2019-05-28       Impact factor: 3.597

3.  Regulation of Cullin-RING E3 ligase dynamics by Inositol hexakisphosphate.

Authors:  Daniel C Scott; Gary Kleiger
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-10       Impact factor: 11.205

4.  Assessing the Cell Permeability of Bivalent Chemical Degraders Using the Chloroalkane Penetration Assay.

Authors:  Caroline A Foley; Frances Potjewyd; Kelsey N Lamb; Lindsey I James; Stephen V Frye
Journal:  ACS Chem Biol       Date:  2019-12-27       Impact factor: 5.100

5.  The Evolving Druggability and Developability Space: Chemically Modified New Modalities and Emerging Small Molecules.

Authors:  Wenzhan Yang; Prajakta Gadgil; Venkata R Krishnamurthy; Margaret Landis; Pankajini Mallick; Dipal Patel; Phenil J Patel; Darren L Reid; Manuel Sanchez-Felix
Journal:  AAPS J       Date:  2020-01-03       Impact factor: 4.009

6.  Polyubiquitin Chains Linked by Lysine Residue 48 (K48) Selectively Target Oxidized Proteins In Vivo.

Authors:  Sandhya Manohar; Samson Jacob; Jade Wang; Keira A Wiechecki; Hiromi W L Koh; Vanessa Simões; Hyungwon Choi; Christine Vogel; Gustavo M Silva
Journal:  Antioxid Redox Signal       Date:  2019-11-20       Impact factor: 8.401

7.  Efficient Synthesis of Immunomodulatory Drug Analogues Enables Exploration of Structure-Degradation Relationships.

Authors:  George M Burslem; Philipp Ottis; Saul Jaime-Figueroa; Alicia Morgan; Philipp M Cromm; Momar Toure; Craig M Crews
Journal:  ChemMedChem       Date:  2018-07-04       Impact factor: 3.466

Review 8.  Pharmacological Modulation of Transcriptional Coregulators in Cancer.

Authors:  Timothy R Bishop; Yuxiang Zhang; Michael A Erb
Journal:  Trends Pharmacol Sci       Date:  2019-05-08       Impact factor: 14.819

Review 9.  Targeted protein degradation in antibacterial drug discovery?

Authors:  Pooja Gopal; Thomas Dick
Journal:  Prog Biophys Mol Biol       Date:  2019-11-16       Impact factor: 3.667

10.  Cell-Based Ligand Discovery for the ENL YEATS Domain.

Authors:  Joshua N Asiaban; Natalia Milosevich; Emily Chen; Timothy R Bishop; Justin Wang; Yuxiang Zhang; Christopher J Ackerman; Eric N Hampton; Travis S Young; Mitchell V Hull; Benjamin F Cravatt; Michael A Erb
Journal:  ACS Chem Biol       Date:  2020-03-19       Impact factor: 5.100

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