Literature DB >> 31356880

Methods to identify and optimize small molecules interacting with RNA (SMIRNAs).

Andrei Ursu1, Simon Vézina-Dawod1, Matthew D Disney2.   

Abstract

RNAs, particularly noncoding RNAs (ncRNAs), are becoming increasingly important therapeutic targets, because they are causative and antagonists of human disease. Indeed, aberrant RNA structural elements and expression deregulate biological processes. In this review, we describe methodologies to discover and optimize small molecules interacting with RNA (SMIRNAs), including the evaluation of direct target engagement and the rescue of RNA-mediated phenotypes in vitro and in vivo. Such studies are essential to fully characterize the mode of action of SMIRNAs and advance our understanding of rationally and efficiently drugging RNAs for therapeutic benefit.
Copyright © 2019. Published by Elsevier Ltd.

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Year:  2019        PMID: 31356880      PMCID: PMC6842402          DOI: 10.1016/j.drudis.2019.06.019

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  96 in total

Review 1.  Targeting RNA with small molecules.

Authors:  Jason R Thomas; Paul J Hergenrother
Journal:  Chem Rev       Date:  2008-03-25       Impact factor: 60.622

Review 2.  Proteolysis targeting chimeras (PROTACs) in 'beyond rule-of-five' chemical space: Recent progress and future challenges.

Authors:  Scott D Edmondson; Bin Yang; Charlene Fallan
Journal:  Bioorg Med Chem Lett       Date:  2019-04-20       Impact factor: 2.823

3.  Targeting RNA with Small Molecules To Capture Opportunities at the Intersection of Chemistry, Biology, and Medicine.

Authors:  Matthew D Disney
Journal:  J Am Chem Soc       Date:  2019-04-19       Impact factor: 15.419

Review 4.  RNA as a small molecule druggable target.

Authors:  Noreen F Rizvi; Graham F Smith
Journal:  Bioorg Med Chem Lett       Date:  2017-10-23       Impact factor: 2.823

5.  Discovery of Selective RNA-Binding Small Molecules by Affinity-Selection Mass Spectrometry.

Authors:  Noreen F Rizvi; John A Howe; Ali Nahvi; Daniel J Klein; Thierry O Fischmann; Hai-Young Kim; Mark A McCoy; Scott S Walker; Alan Hruza; Matthew P Richards; Chad Chamberlin; Peter Saradjian; Margaret T Butko; Gabriel Mercado; Julja Burchard; Corey Strickland; Peter J Dandliker; Graham F Smith; Elliott B Nickbarg
Journal:  ACS Chem Biol       Date:  2018-02-14       Impact factor: 5.100

6.  The tumour suppressor protein VHL targets hypoxia-inducible factors for oxygen-dependent proteolysis.

Authors:  P H Maxwell; M S Wiesener; G W Chang; S C Clifford; E C Vaux; M E Cockman; C C Wykoff; C W Pugh; E R Maher; P J Ratcliffe
Journal:  Nature       Date:  1999-05-20       Impact factor: 49.962

7.  Fluorescent peptide displacement as a general assay for screening small molecule libraries against RNA.

Authors:  Neeraj N Patwardhan; Zhengguo Cai; Colby N Newson; Amanda E Hargrove
Journal:  Org Biomol Chem       Date:  2019-02-13       Impact factor: 3.876

8.  A hypoxia-induced positive feedback loop promotes hypoxia-inducible factor 1alpha stability through miR-210 suppression of glycerol-3-phosphate dehydrogenase 1-like.

Authors:  Timothy J Kelly; Amanda L Souza; Clary B Clish; Pere Puigserver
Journal:  Mol Cell Biol       Date:  2011-05-09       Impact factor: 4.272

9.  Development and Implementation of an HTS-Compatible Assay for the Discovery of Selective Small-Molecule Ligands for Pre-microRNAs.

Authors:  Daniel A Lorenz; Steve Vander Roest; Martha J Larsen; Amanda L Garner
Journal:  SLAS Discov       Date:  2017-07-07       Impact factor: 3.341

10.  MiR-210 promotes a hypoxic phenotype and increases radioresistance in human lung cancer cell lines.

Authors:  S Grosso; J Doyen; S K Parks; T Bertero; A Paye; B Cardinaud; P Gounon; S Lacas-Gervais; A Noël; J Pouysségur; P Barbry; N M Mazure; B Mari
Journal:  Cell Death Dis       Date:  2013-03-14       Impact factor: 8.469

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  11 in total

1.  RNA: Opening New Doors in Medicinal Chemistry.

Authors:  Amanda L Garner; Stevan W Djuric
Journal:  ACS Med Chem Lett       Date:  2020-08-19       Impact factor: 4.345

2.  Small molecule-RNA targeting: starting with the fundamentals.

Authors:  Amanda E Hargrove
Journal:  Chem Commun (Camb)       Date:  2020-11-26       Impact factor: 6.222

3.  Gini Coefficients as a Single Value Metric to Define Chemical Probe Selectivity.

Authors:  Andrei Ursu; Jessica L Childs-Disney; Alicia J Angelbello; Matthew G Costales; Samantha M Meyer; Matthew D Disney
Journal:  ACS Chem Biol       Date:  2020-07-09       Impact factor: 5.100

4.  Precise Targeted Cleavage of a r(CUG) Repeat Expansion in Cells by Using a Small-Molecule-Deglycobleomycin Conjugate.

Authors:  Alicia J Angelbello; Mary E DeFeo; Christopher M Glinkerman; Dale L Boger; Matthew D Disney
Journal:  ACS Chem Biol       Date:  2020-03-18       Impact factor: 5.100

5.  How We Think about Targeting RNA with Small Molecules.

Authors:  Matthew G Costales; Jessica L Childs-Disney; Hafeez S Haniff; Matthew D Disney
Journal:  J Med Chem       Date:  2020-03-26       Impact factor: 7.446

Review 6.  Unnatural bases for recognition of noncoding nucleic acid interfaces.

Authors:  Shiqin Miao; Yufeng Liang; Sarah Rundell; Debmalya Bhunia; Shekar Devari; Oliver Munyaradzi; Dennis Bong
Journal:  Biopolymers       Date:  2020-09-24       Impact factor: 2.505

7.  Screening of Minimalist Noncanonical Sites in Duplex DNA and RNA Reveals Context and Motif-Selective Binding by Fluorogenic Base Probes.

Authors:  Yufeng Liang; Shiqin Miao; Jie Mao; Shekaraiah Devari; Maricarmen Gonzalez; Dennis Bong
Journal:  Chemistry       Date:  2021-11-24       Impact factor: 5.236

8.  Massively Parallel Optimization of the Linker Domain in Small Molecule Dimers Targeting a Toxic r(CUG) Repeat Expansion.

Authors:  Simon Vezina-Dawod; Alicia J Angelbello; Shruti Choudhary; Kye Won Wang; Ilyas Yildirim; Matthew D Disney
Journal:  ACS Med Chem Lett       Date:  2021-03-02       Impact factor: 4.632

9.  RNA: Opening New Doors in Medicinal Chemistry, a Special Issue.

Authors:  Amanda L Garner; Stevan W Djuric
Journal:  ACS Med Chem Lett       Date:  2021-06-10       Impact factor: 4.632

10.  Discovery of Surfactins as Inhibitors of MicroRNA Processing Using Cat-ELCCA.

Authors:  Andrew W Robertson; Jorge Sandoval; Osama G Mohamed; Yihao Zhuang; Erin E Gallagher; Jennifer Schmidt; Lisa Caratelli; Arya Menon; Pamela J Schultz; Rachel M Torrez; Catherine L Hay; Bailey A Bell; Paul A Price; Amanda L Garner; Ashootosh Tripathi
Journal:  ACS Med Chem Lett       Date:  2021-04-02       Impact factor: 4.632

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