Literature DB >> 28592174

At Light Speed: Advances in Optogenetic Systems for Regulating Cell Signaling and Behavior.

Nicole A Repina1,2, Alyssa Rosenbloom1, Abhirup Mukherjee3, David V Schaffer1,4,5,6, Ravi S Kane3.   

Abstract

Cells are bombarded by extrinsic signals that dynamically change in time and space. Such dynamic variations can exert profound effects on behaviors, including cellular signaling, organismal development, stem cell differentiation, normal tissue function, and disease processes such as cancer. Although classical genetic tools are well suited to introduce binary perturbations, new approaches have been necessary to investigate how dynamic signal variation may regulate cell behavior. This fundamental question is increasingly being addressed with optogenetics, a field focused on engineering and harnessing light-sensitive proteins to interface with cellular signaling pathways. Channelrhodopsins initially defined optogenetics; however, through recent use of light-responsive proteins with myriad spectral and functional properties, practical applications of optogenetics currently encompass cell signaling, subcellular localization, and gene regulation. Now, important questions regarding signal integration within branch points of signaling networks, asymmetric cell responses to spatially restricted signals, and effects of signal dosage versus duration can be addressed. This review summarizes emerging technologies and applications within the expanding field of optogenetics.

Entities:  

Keywords:  illumination; photostimulation; photoswitching; signal transduction; spatiotemporal

Mesh:

Substances:

Year:  2017        PMID: 28592174      PMCID: PMC5747958          DOI: 10.1146/annurev-chembioeng-060816-101254

Source DB:  PubMed          Journal:  Annu Rev Chem Biomol Eng        ISSN: 1947-5438            Impact factor:   11.059


  140 in total

Review 1.  Phytochrome photosensory signalling networks.

Authors:  Peter H Quail
Journal:  Nat Rev Mol Cell Biol       Date:  2002-02       Impact factor: 94.444

2.  An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology.

Authors:  Alexander M Aravanis; Li-Ping Wang; Feng Zhang; Leslie A Meltzer; Murtaza Z Mogri; M Bret Schneider; Karl Deisseroth
Journal:  J Neural Eng       Date:  2007-05-31       Impact factor: 5.379

3.  Light-inducible activation of target mRNA translation in mammalian cells.

Authors:  Jicong Cao; Manish Arha; Chaitanya Sudrik; Lukasz J Bugaj; David V Schaffer; Ravi S Kane
Journal:  Chem Commun (Camb)       Date:  2013-09-28       Impact factor: 6.222

Review 4.  LOV to BLUF: flavoprotein contributions to the optogenetic toolkit.

Authors:  John M Christie; Jayde Gawthorne; Gillian Young; Niall J Fraser; Andrew J Roe
Journal:  Mol Plant       Date:  2012-03-19       Impact factor: 13.164

5.  FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis.

Authors:  Mariko Sawa; Dmitri A Nusinow; Steve A Kay; Takato Imaizumi
Journal:  Science       Date:  2007-09-13       Impact factor: 47.728

6.  Rationally improving LOV domain-based photoswitches.

Authors:  Devin Strickland; Xiaolan Yao; Grzegorz Gawlak; Michael K Rosen; Kevin H Gardner; Tobin R Sosnick
Journal:  Nat Methods       Date:  2010-06-20       Impact factor: 28.547

7.  Mechanism-based tuning of a LOV domain photoreceptor.

Authors:  Brian D Zoltowski; Brian Vaccaro; Brian R Crane
Journal:  Nat Chem Biol       Date:  2009-08-30       Impact factor: 15.040

8.  Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.

Authors:  Jean-Jacques Favory; Agnieszka Stec; Henriette Gruber; Luca Rizzini; Attila Oravecz; Markus Funk; Andreas Albert; Catherine Cloix; Gareth I Jenkins; Edward J Oakeley; Harald K Seidlitz; Ferenc Nagy; Roman Ulm
Journal:  EMBO J       Date:  2009-01-22       Impact factor: 11.598

9.  ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.

Authors:  John Y Lin; Per Magne Knutsen; Arnaud Muller; David Kleinfeld; Roger Y Tsien
Journal:  Nat Neurosci       Date:  2013-09-01       Impact factor: 24.884

10.  Optical Control of Peroxisomal Trafficking.

Authors:  Jessica I Spiltoir; Devin Strickland; Michael Glotzer; Chandra L Tucker
Journal:  ACS Synth Biol       Date:  2015-11-02       Impact factor: 5.110

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  41 in total

Review 1.  Enabling biodegradable functional biomaterials for the management of neurological disorders.

Authors:  Dingying Shan; Chuying Ma; Jian Yang
Journal:  Adv Drug Deliv Rev       Date:  2019-06-20       Impact factor: 15.470

2.  Reverse and Forward Engineering Multicellular Structures with Optogenetics.

Authors:  Thomas R Mumford; Lee Roth; Lukasz J Bugaj
Journal:  Curr Opin Biomed Eng       Date:  2020-10-14

Review 3.  Optochemical Control of Biological Processes in Cells and Animals.

Authors:  Nicholas Ankenbruck; Taylor Courtney; Yuta Naro; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2018-02-01       Impact factor: 15.336

Review 4.  Optogenetics: the new molecular approach to control functions of neural cells in epilepsy, depression and tumors of the central nervous system.

Authors:  Bruno Camporeze; Bruno Alcântara Manica; Gabriel Alves Bonafé; Jivago Jordão Camargos Ferreira; Aurélio Lourenço Diniz; Carlos Tadeu Parisi de Oliveira; Luis Roberto Mathias Junior; Paulo Henrique Pires de Aguiar; Manoela Marques Ortega
Journal:  Am J Cancer Res       Date:  2018-10-01       Impact factor: 6.166

Review 5.  Illuminating developmental biology with cellular optogenetics.

Authors:  Heath E Johnson; Jared E Toettcher
Journal:  Curr Opin Biotechnol       Date:  2018-03-02       Impact factor: 9.740

Review 6.  Light-Switchable Ion Channels and Receptors for Optogenetic Interrogation of Neuronal Signaling.

Authors:  Wan-Chen Lin; Richard H Kramer
Journal:  Bioconjug Chem       Date:  2018-02-21       Impact factor: 4.774

7.  Optogenetic tools for cell biological applications.

Authors:  Abhirup Mukherjee; Nicole A Repina; David V Schaffer; Ravi S Kane
Journal:  J Thorac Dis       Date:  2017-12       Impact factor: 2.895

Review 8.  Light-induced regulation of ligand-gated channel activity.

Authors:  Piotr Bregestovski; Galyna Maleeva; Pau Gorostiza
Journal:  Br J Pharmacol       Date:  2017-10-06       Impact factor: 8.739

9.  β-Catenin signaling dynamics regulate cell fate in differentiating neural stem cells.

Authors:  Alyssa B Rosenbloom; Marcin Tarczyński; Nora Lam; Ravi S Kane; Lukasz J Bugaj; David V Schaffer
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

Review 10.  Recent advances in the optical control of protein function through genetic code expansion.

Authors:  Taylor Courtney; Alexander Deiters
Journal:  Curr Opin Chem Biol       Date:  2018-07-26       Impact factor: 8.822

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