Literature DB >> 29505976

Illuminating developmental biology with cellular optogenetics.

Heath E Johnson1, Jared E Toettcher2.   

Abstract

In developmental biology, localization is everything. The same stimulus-cell signaling event or expression of a gene-can have dramatically different effects depending on the time, spatial position, and cell types in which it is applied. Yet the field has long lacked the ability to deliver localized perturbations with high specificity in vivo. The advent of optogenetic tools, capable of delivering highly localized stimuli, is thus poised to profoundly expand our understanding of development. We describe the current state-of-the-art in cellular optogenetic tools, review the first wave of major studies showcasing their application in vivo, and discuss major obstacles that must be overcome if the promise of developmental optogenetics is to be fully realized.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29505976      PMCID: PMC6082700          DOI: 10.1016/j.copbio.2018.02.003

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  55 in total

1.  Tight control of gene expression in mammalian cells by tetracycline-responsive promoters.

Authors:  M Gossen; H Bujard
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

2.  Temporally precise in vivo control of intracellular signalling.

Authors:  Raag D Airan; Kimberly R Thompson; Lief E Fenno; Hannah Bernstein; Karl Deisseroth
Journal:  Nature       Date:  2009-03-18       Impact factor: 49.962

3.  Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets.

Authors:  Yongdae Shin; Joel Berry; Nicole Pannucci; Mikko P Haataja; Jared E Toettcher; Clifford P Brangwynne
Journal:  Cell       Date:  2016-12-29       Impact factor: 41.582

4.  Optimized Gal4 genetics for permanent gene expression mapping in zebrafish.

Authors:  Martin Distel; Mario F Wullimann; Reinhard W Köster
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-23       Impact factor: 11.205

5.  Spatio-temporally precise activation of engineered receptor tyrosine kinases by light.

Authors:  Michael Grusch; Karin Schelch; Robert Riedler; Eva Reichhart; Christopher Differ; Walter Berger; Álvaro Inglés-Prieto; Harald Janovjak
Journal:  EMBO J       Date:  2014-07-01       Impact factor: 11.598

6.  Efficient synthesis of phycocyanobilin in mammalian cells for optogenetic control of cell signaling.

Authors:  Youichi Uda; Yuhei Goto; Shigekazu Oda; Takayuki Kohchi; Michiyuki Matsuda; Kazuhiro Aoki
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-24       Impact factor: 11.205

7.  A LOV2 domain-based optogenetic tool to control protein degradation and cellular function.

Authors:  Christian Renicke; Daniel Schuster; Svetlana Usherenko; Lars-Oliver Essen; Christof Taxis
Journal:  Chem Biol       Date:  2013-04-18

8.  Rapid blue-light-mediated induction of protein interactions in living cells.

Authors:  Matthew J Kennedy; Robert M Hughes; Leslie A Peteya; Joel W Schwartz; Michael D Ehlers; Chandra L Tucker
Journal:  Nat Methods       Date:  2010-10-31       Impact factor: 28.547

9.  A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors:  Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

10.  Targeted gene expression as a means of altering cell fates and generating dominant phenotypes.

Authors:  A H Brand; N Perrimon
Journal:  Development       Date:  1993-06       Impact factor: 6.868

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  22 in total

1.  Unraveling the Mechanism of a LOV Domain Optogenetic Sensor: A Glutamine Lever Induces Unfolding of the Jα Helix.

Authors:  James N Iuliano; Jinnette Tolentino Collado; Agnieszka A Gil; Pavithran T Ravindran; Andras Lukacs; SeungYoun Shin; Helena A Woroniecka; Katrin Adamczyk; James M Aramini; Uthama R Edupuganti; Christopher R Hall; Gregory M Greetham; Igor V Sazanovich; Ian P Clark; Taraneh Daryaee; Jared E Toettcher; Jarrod B French; Kevin H Gardner; Carlos L Simmerling; Stephen R Meech; Peter J Tonge
Journal:  ACS Chem Biol       Date:  2020-09-18       Impact factor: 5.100

Review 2.  Designing protein structures and complexes with the molecular modeling program Rosetta.

Authors:  Brian Kuhlman
Journal:  J Biol Chem       Date:  2019-11-07       Impact factor: 5.157

3.  Optogenetic Rescue of a Patterning Mutant.

Authors:  Heath E Johnson; Nareg J V Djabrayan; Stanislav Y Shvartsman; Jared E Toettcher
Journal:  Curr Biol       Date:  2020-07-23       Impact factor: 10.834

Review 4.  Revealing epithelial morphogenetic mechanisms through live imaging.

Authors:  Payam E Farahani; Celeste M Nelson
Journal:  Curr Opin Genet Dev       Date:  2021-12-01       Impact factor: 5.578

5.  Optimizing photoswitchable MEK.

Authors:  Aleena L Patel; Eyan Yeung; Sarah E McGuire; Andrew Y Wu; Jared E Toettcher; Rebecca D Burdine; Stanislav Y Shvartsman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-03       Impact factor: 11.205

Review 6.  Drosophila as a Model for Assessing the Function of RNA-Binding Proteins during Neurogenesis and Neurological Disease.

Authors:  Eugenia C Olesnicky; Ethan G Wright
Journal:  J Dev Biol       Date:  2018-08-18

7.  Engineered BRET-Based Biologic Light Sources Enable Spatiotemporal Control over Diverse Optogenetic Systems.

Authors:  Kshitij Parag-Sharma; Colin P O'Banion; Erin C Henry; Adele M Musicant; John L Cleveland; David S Lawrence; Antonio L Amelio
Journal:  ACS Synth Biol       Date:  2019-12-17       Impact factor: 5.110

8.  Temporal induction of Lhx8 by optogenetic control system for efficient bone regeneration.

Authors:  Delan Huang; Runze Li; Jianhan Ren; Haotian Luo; Weicai Wang; Chen Zhou
Journal:  Stem Cell Res Ther       Date:  2021-06-10       Impact factor: 6.832

9.  Photocleavable proteins that undergo fast and efficient dissociation.

Authors:  Xiaocen Lu; Yurong Wen; Shuce Zhang; Wei Zhang; Yilun Chen; Yi Shen; M Joanne Lemieux; Robert E Campbell
Journal:  Chem Sci       Date:  2021-05-31       Impact factor: 9.825

10.  Using optogenetics to link myosin patterns to contractile cell behaviors during convergent extension.

Authors:  R Marisol Herrera-Perez; Christian Cupo; Cole Allan; Annie Lin; Karen E Kasza
Journal:  Biophys J       Date:  2021-07-20       Impact factor: 3.699

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