Literature DB >> 28546576

Adenine N6-methylation in diverse fungi.

Michael F Seidl1.   

Abstract

A DNA modification-methylation of cytosines and adenines-has important roles in diverse processes such as regulation of gene expression and genome stability, yet until recently adenine methylation had been considered to be only a hallmark of prokaryotes. A new study identifies abundant adenine methylation of transcriptionally active genes in early-diverging fungi that, together with recent other work, emphasizes the importance of adenine methylation in eukaryotes.

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Year:  2017        PMID: 28546576     DOI: 10.1038/ng.3873

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  14 in total

Review 1.  Functions of DNA methylation: islands, start sites, gene bodies and beyond.

Authors:  Peter A Jones
Journal:  Nat Rev Genet       Date:  2012-05-29       Impact factor: 53.242

2.  Conservation and divergence of methylation patterning in plants and animals.

Authors:  Suhua Feng; Shawn J Cokus; Xiaoyu Zhang; Pao-Yang Chen; Magnolia Bostick; Mary G Goll; Jonathan Hetzel; Jayati Jain; Steven H Strauss; Marnie E Halpern; Chinweike Ukomadu; Kirsten C Sadler; Sriharsa Pradhan; Matteo Pellegrini; Steven E Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-15       Impact factor: 11.205

3.  N6-methyldeoxyadenosine marks active transcription start sites in Chlamydomonas.

Authors:  Ye Fu; Guan-Zheng Luo; Kai Chen; Xin Deng; Miao Yu; Dali Han; Ziyang Hao; Jianzhao Liu; Xingyu Lu; Louis C Dore; Xiaocheng Weng; Quanjiang Ji; Laurens Mets; Chuan He
Journal:  Cell       Date:  2015-04-30       Impact factor: 41.582

4.  N6-methyladenine DNA modification in Drosophila.

Authors:  Guoqiang Zhang; Hua Huang; Di Liu; Ying Cheng; Xiaoling Liu; Wenxin Zhang; Ruichuan Yin; Dapeng Zhang; Peng Zhang; Jianzhao Liu; Chaoyi Li; Baodong Liu; Yuewan Luo; Yuanxiang Zhu; Ning Zhang; Shunmin He; Chuan He; Hailin Wang; Dahua Chen
Journal:  Cell       Date:  2015-04-30       Impact factor: 41.582

5.  Detecting DNA cytosine methylation using nanopore sequencing.

Authors:  Jared T Simpson; Rachael E Workman; P C Zuzarte; Matei David; L J Dursi; Winston Timp
Journal:  Nat Methods       Date:  2017-02-20       Impact factor: 28.547

Review 6.  N6-methyl-adenine: an epigenetic signal for DNA-protein interactions.

Authors:  Didier Wion; Josep Casadesús
Journal:  Nat Rev Microbiol       Date:  2006-03       Impact factor: 60.633

7.  DNA methylation on N(6)-adenine in mammalian embryonic stem cells.

Authors:  Tao P Wu; Tao Wang; Matthew G Seetin; Yongquan Lai; Shijia Zhu; Kaixuan Lin; Yifei Liu; Stephanie D Byrum; Samuel G Mackintosh; Mei Zhong; Alan Tackett; Guilin Wang; Lawrence S Hon; Gang Fang; James A Swenberg; Andrew Z Xiao
Journal:  Nature       Date:  2016-03-30       Impact factor: 49.962

8.  The Epigenomic Landscape of Prokaryotes.

Authors:  Matthew J Blow; Tyson A Clark; Chris G Daum; Adam M Deutschbauer; Alexey Fomenkov; Roxanne Fries; Jeff Froula; Dongwan D Kang; Rex R Malmstrom; Richard D Morgan; Janos Posfai; Kanwar Singh; Axel Visel; Kelly Wetmore; Zhiying Zhao; Edward M Rubin; Jonas Korlach; Len A Pennacchio; Richard J Roberts
Journal:  PLoS Genet       Date:  2016-02-12       Impact factor: 5.917

Review 9.  DNA N(6)-methyladenine: a new epigenetic mark in eukaryotes?

Authors:  Guan-Zheng Luo; Mario Andres Blanco; Eric Lieberman Greer; Chuan He; Yang Shi
Journal:  Nat Rev Mol Cell Biol       Date:  2015-10-28       Impact factor: 94.444

10.  Characterization of eukaryotic DNA N(6)-methyladenine by a highly sensitive restriction enzyme-assisted sequencing.

Authors:  Guan-Zheng Luo; Fang Wang; Xiaocheng Weng; Kai Chen; Ziyang Hao; Miao Yu; Xin Deng; Jianzhao Liu; Chuan He
Journal:  Nat Commun       Date:  2016-04-15       Impact factor: 14.919

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  5 in total

Review 1.  Same modification, different location: the mythical role of N6-adenine methylation in plant genomes.

Authors:  Irma A Jiménez-Ramírez; Gema Pijeira-Fernández; Delia M Moreno-Cálix; Clelia De-la-Peña
Journal:  Planta       Date:  2022-06-13       Impact factor: 4.116

Review 2.  DNA N6-methyldeoxyadenosine in mammals and human disease.

Authors:  Chao Shen; Kitty Wang; Xiaolan Deng; Jianjun Chen
Journal:  Trends Genet       Date:  2022-01-03       Impact factor: 11.639

Review 3.  Epigenetic Methylations on N6-Adenine and N6-Adenosine with the same Input but Different Output.

Authors:  Zhiqing Li; Ping Zhao; Qingyou Xia
Journal:  Int J Mol Sci       Date:  2019-06-15       Impact factor: 5.923

Review 4.  Chromatin-dependent regulation of secondary metabolite biosynthesis in fungi: is the picture complete?

Authors:  Jérôme Collemare; Michael F Seidl
Journal:  FEMS Microbiol Rev       Date:  2019-11-01       Impact factor: 16.408

5.  Identification of Putative Virulence Genes by DNA Methylation Studies in the Cereal Pathogen Fusarium graminearum.

Authors:  Francesco Tini; Giovanni Beccari; Gianpiero Marconi; Andrea Porceddu; Micheal Sulyok; Donald M Gardiner; Emidio Albertini; Lorenzo Covarelli
Journal:  Cells       Date:  2021-05-13       Impact factor: 6.600

  5 in total

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