Literature DB >> 26507168

DNA N(6)-methyladenine: a new epigenetic mark in eukaryotes?

Guan-Zheng Luo1, Mario Andres Blanco2, Eric Lieberman Greer3, Chuan He1, Yang Shi2.   

Abstract

DNA N(6)-adenine methylation (N(6)-methyladenine; 6mA) in prokaryotes functions primarily in the host defence system. The prevalence and significance of this modification in eukaryotes had been unclear until recently. Here, we discuss recent publications documenting the presence of 6mA in Chlamydomonas reinhardtii, Drosophila melanogaster and Caenorhabditis elegans; consider possible roles for this DNA modification in regulating transcription, the activity of transposable elements and transgenerational epigenetic inheritance; and propose 6mA as a new epigenetic mark in eukaryotes.

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Year:  2015        PMID: 26507168      PMCID: PMC4763336          DOI: 10.1038/nrm4076

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  68 in total

Review 1.  Diverse functions of restriction-modification systems in addition to cellular defense.

Authors:  Kommireddy Vasu; Valakunja Nagaraja
Journal:  Microbiol Mol Biol Rev       Date:  2013-03       Impact factor: 11.056

Review 2.  DNA methylation: roles in mammalian development.

Authors:  Zachary D Smith; Alexander Meissner
Journal:  Nat Rev Genet       Date:  2013-02-12       Impact factor: 53.242

3.  Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes.

Authors:  Jason T Huff; Daniel Zilberman
Journal:  Cell       Date:  2014-03-13       Impact factor: 41.582

4.  A histone methylation network regulates transgenerational epigenetic memory in C. elegans.

Authors:  Eric L Greer; Sara E Beese-Sims; Emily Brookes; Ruggero Spadafora; Yun Zhu; Scott B Rothbart; David Aristizábal-Corrales; Shuzhen Chen; Aimee I Badeaux; Qiuye Jin; Wei Wang; Brian D Strahl; Monica P Colaiácovo; Yang Shi
Journal:  Cell Rep       Date:  2014-03-27       Impact factor: 9.423

5.  The CcrM DNA methyltransferase is widespread in the alpha subdivision of proteobacteria, and its essential functions are conserved in Rhizobium meliloti and Caulobacter crescentus.

Authors:  R Wright; C Stephens; L Shapiro
Journal:  J Bacteriol       Date:  1997-09       Impact factor: 3.490

6.  Crystal structure of TET2-DNA complex: insight into TET-mediated 5mC oxidation.

Authors:  Lulu Hu; Ze Li; Jingdong Cheng; Qinhui Rao; Wei Gong; Mengjie Liu; Yujiang Geno Shi; Jiayu Zhu; Ping Wang; Yanhui Xu
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

7.  Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase.

Authors:  J A Bokar; M E Shambaugh; D Polayes; A G Matera; F M Rottman
Journal:  RNA       Date:  1997-11       Impact factor: 4.942

8.  FTO-mediated formation of N6-hydroxymethyladenosine and N6-formyladenosine in mammalian RNA.

Authors:  Ye Fu; Guifang Jia; Xueqin Pang; Richard N Wang; Xiao Wang; Charles J Li; Scott Smemo; Qing Dai; Kathleen A Bailey; Marcelo A Nobrega; Ke-Li Han; Qiang Cui; Chuan He
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

9.  A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation.

Authors:  Jianzhao Liu; Yanan Yue; Dali Han; Xiao Wang; Ye Fu; Liang Zhang; Guifang Jia; Miao Yu; Zhike Lu; Xin Deng; Qing Dai; Weizhong Chen; Chuan He
Journal:  Nat Chem Biol       Date:  2013-12-06       Impact factor: 15.040

10.  Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species.

Authors:  Floriana Capuano; Michael Mülleder; Robert Kok; Henk J Blom; Markus Ralser
Journal:  Anal Chem       Date:  2014-03-25       Impact factor: 6.986

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  68 in total

Review 1.  Yin-yang actions of histone methylation regulatory complexes in the brain.

Authors:  Patricia Marie Garay; Margarete Aryanka Wallner; Shigeki Iwase
Journal:  Epigenomics       Date:  2016-11-18       Impact factor: 4.778

Review 2.  DNA Methylation and Susceptibility to Autism Spectrum Disorder.

Authors:  Martine W Tremblay; Yong-Hui Jiang
Journal:  Annu Rev Med       Date:  2019-01-27       Impact factor: 13.739

Review 3.  Caenorhabditis elegans as an emerging model system in environmental epigenetics.

Authors:  Caren Weinhouse; Lisa Truong; Joel N Meyer; Patrick Allard
Journal:  Environ Mol Mutagen       Date:  2018-08-09       Impact factor: 3.216

4.  A reassessment of DNA-immunoprecipitation-based genomic profiling.

Authors:  Antonio Lentini; Cathrine Lagerwall; Svante Vikingsson; Heidi K Mjoseng; Karolos Douvlataniotis; Hartmut Vogt; Henrik Green; Richard R Meehan; Mikael Benson; Colm E Nestor
Journal:  Nat Methods       Date:  2018-06-25       Impact factor: 28.547

Review 5.  The Aging Epigenome.

Authors:  Lauren N Booth; Anne Brunet
Journal:  Mol Cell       Date:  2016-06-02       Impact factor: 17.970

6.  Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization.

Authors:  Leslie Y Beh; Galia T Debelouchina; Derek M Clay; Robert E Thompson; Kelsi A Lindblad; Elizabeth R Hutton; John R Bracht; Robert P Sebra; Tom W Muir; Laura F Landweber
Journal:  Cell       Date:  2019-05-16       Impact factor: 41.582

Review 7.  N6-Methyladenine: A Conserved and Dynamic DNA Mark.

Authors:  Zach Klapholz O'Brown; Eric Lieberman Greer
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

Review 8.  Asymmetric inheritance of epigenetic states in asymmetrically dividing stem cells.

Authors:  Emily H Zion; Chinmayi Chandrasekhara; Xin Chen
Journal:  Curr Opin Cell Biol       Date:  2020-08-29       Impact factor: 8.382

Review 9.  Protecting and Diversifying the Germline.

Authors:  Ryan J Gleason; Amit Anand; Toshie Kai; Xin Chen
Journal:  Genetics       Date:  2018-02       Impact factor: 4.562

Review 10.  N(6)-Methyladenine in eukaryotes.

Authors:  Myles H Alderman; Andrew Z Xiao
Journal:  Cell Mol Life Sci       Date:  2019-05-29       Impact factor: 9.261

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