Literature DB >> 28503658

Emerging Loop-Mediated Isothermal Amplification-Based Microchip and Microdevice Technologies for Nucleic Acid Detection.

Mohammadali Safavieh1, Manoj K Kanakasabapathy1, Farhang Tarlan1, Minhaz U Ahmed2, Mohammed Zourob3, Waseem Asghar4, Hadi Shafiee1.   

Abstract

Rapid, sensitive, and selective pathogen detection is of paramount importance in infectious disease diagnosis and treatment monitoring. Currently available diagnostic assays based on polymerase chain reaction (PCR) and enzyme-linked immunosorbent assay (ELISA) are time-consuming, complex, and relatively expensive, thus limiting their utility in resource-limited settings. Loop-mediated isothermal amplification (LAMP) technique has been used extensively in the development of rapid and sensitive diagnostic assays for pathogen detection and nucleic acid analysis and hold great promise for revolutionizing point-of-care molecular diagnostics. Here, we review novel LAMP-based lab-on-a-chip (LOC) diagnostic assays developed for pathogen detection over the past several years. We review various LOC platforms based on their design strategies for pathogen detection and discuss LAMP-based platforms still in development and already in the commercial pipeline. This review is intended as a guide to the use of LAMP techniques in LOC platforms for molecular diagnostics and genomic amplifications.

Entities:  

Keywords:  LAMP; lab on a chip; microfluidics; molecular diagnostics; nucleic acid tests; pathogen detection

Year:  2016        PMID: 28503658      PMCID: PMC5425166          DOI: 10.1021/acsbiomaterials.5b00449

Source DB:  PubMed          Journal:  ACS Biomater Sci Eng        ISSN: 2373-9878


  120 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

Review 2.  Micro total analysis systems. 2. Analytical standard operations and applications.

Authors:  Pierre-Alain Auroux; Dimitri Iossifidis; Darwin R Reyes; Andreas Manz
Journal:  Anal Chem       Date:  2002-06-15       Impact factor: 6.986

Review 3.  Point-of-care diagnostics for global health.

Authors:  Paul Yager; Gonzalo J Domingo; John Gerdes
Journal:  Annu Rev Biomed Eng       Date:  2008       Impact factor: 9.590

4.  A CCD-based fluorescence imaging system for real-time loop-mediated isothermal amplification-based rapid and sensitive detection of waterborne pathogens on microchips.

Authors:  Farhan Ahmad; Gregoire Seyrig; Dieter M Tourlousse; Robert D Stedtfeld; James M Tiedje; Syed A Hashsham
Journal:  Biomed Microdevices       Date:  2011-10       Impact factor: 2.838

5.  Single primer-triggered isothermal amplification for double-stranded DNA detection.

Authors:  Cuiping Ma; Dianang Han; Meilian Deng; Jingfei Wang; Chao Shi
Journal:  Chem Commun (Camb)       Date:  2015-01-11       Impact factor: 6.222

6.  Electrochemical genosensor for the rapid detection of GMO using loop-mediated isothermal amplification.

Authors:  Minhaz Uddin Ahmed; Masato Saito; M Mosharraf Hossain; S Ramachandara Rao; Satoshi Furui; Akihiro Hino; Yuzuru Takamura; Masahiro Takagi; Eiichi Tamiya
Journal:  Analyst       Date:  2009-02-26       Impact factor: 4.616

7.  LAMP using a disposable pocket warmer for anthrax detection, a highly mobile and reliable method for anti-bioterrorism.

Authors:  Ben Hatano; Takayuki Maki; Takeyuki Obara; Hitomi Fukumoto; Kohsuke Hagisawa; Yoshitaro Matsushita; Akiko Okutani; Boldbaastar Bazartseren; Satoshi Inoue; Tetsutaro Sata; Harutaka Katano
Journal:  Jpn J Infect Dis       Date:  2010-01       Impact factor: 1.362

8.  A simple cassette as point-of-care diagnostic device for naked-eye colorimetric bacteria detection.

Authors:  Mohammadali Safavieh; Minhaz Uddin Ahmed; Esen Sokullu; Andy Ng; Liliana Braescu; Mohammed Zourob
Journal:  Analyst       Date:  2014-01-21       Impact factor: 4.616

9.  Nucleic Acid-based Detection of Bacterial Pathogens Using Integrated Microfluidic Platform Systems.

Authors:  Clarissa Lui; Nathaniel C Cady; Carl A Batt
Journal:  Sensors (Basel)       Date:  2009-05-18       Impact factor: 3.576

10.  Nuclemeter: a reaction-diffusion based method for quantifying nucleic acids undergoing enzymatic amplification.

Authors:  Changchun Liu; Mohamed M Sadik; Michael G Mauk; Paul H Edelstein; Frederic D Bushman; Robert Gross; Haim H Bau
Journal:  Sci Rep       Date:  2014-12-05       Impact factor: 4.379

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  34 in total

Review 1.  Strategies in Ebola virus disease (EVD) diagnostics at the point of care.

Authors:  Chad T Coarsey; Nwadiuto Esiobu; Ramswamy Narayanan; Mirjana Pavlovic; Hadi Shafiee; Waseem Asghar
Journal:  Crit Rev Microbiol       Date:  2017-04-25       Impact factor: 7.624

2.  Enhanced sample filling and discretization in thermoplastic 2D microwell arrays using asymmetric contact angles.

Authors:  S Padmanabhan; J Y Han; I Nanayankkara; K Tran; P Ho; N Mesfin; I White; D L DeVoe
Journal:  Biomicrofluidics       Date:  2020-02-18       Impact factor: 2.800

3.  Paper microchip with a graphene-modified silver nano-composite electrode for electrical sensing of microbial pathogens.

Authors:  Mohammadali Safavieh; Vivasvat Kaul; Sultan Khetani; Anupriya Singh; Karan Dhingra; Manoj Kumar Kanakasabapathy; Mohamed Shehata Draz; Adnan Memic; Daniel R Kuritzkes; Hadi Shafiee
Journal:  Nanoscale       Date:  2017-02-02       Impact factor: 7.790

Review 4.  Paper-based analytical devices for clinical diagnosis: recent advances in the fabrication techniques and sensing mechanisms.

Authors:  Mazhar Sher; Rachel Zhuang; Utkan Demirci; Waseem Asghar
Journal:  Expert Rev Mol Diagn       Date:  2017-04       Impact factor: 5.225

5.  Rapid Real-Time Antimicrobial Susceptibility Testing with Electrical Sensing on Plastic Microchips with Printed Electrodes.

Authors:  Mohammadali Safavieh; Hardik J Pandya; Maanasa Venkataraman; Prudhvi Thirumalaraju; Manoj Kumar Kanakasabapathy; Anupriya Singh; Devbalaji Prabhakar; Manjyot Kaur Chug; Hadi Shafiee
Journal:  ACS Appl Mater Interfaces       Date:  2017-03-30       Impact factor: 9.229

6.  Whole-Cell Pseudomonas aeruginosa Localized Surface Plasmon Resonance Aptasensor.

Authors:  Jiayun Hu; Kaiyu Fu; Paul W Bohn
Journal:  Anal Chem       Date:  2018-01-05       Impact factor: 6.986

7.  A field-deployable mobile molecular diagnostic system for malaria at the point of need.

Authors:  Gihoon Choi; Daniel Song; Sony Shrestha; Jun Miao; Liwang Cui; Weihua Guan
Journal:  Lab Chip       Date:  2016-11-01       Impact factor: 6.799

Review 8.  Visible-light and near-infrared fluorescence and surface-enhanced Raman scattering point-of-care sensing and bio-imaging: a review.

Authors:  Yingjie Hang; Jennifer Boryczka; Nianqiang Wu
Journal:  Chem Soc Rev       Date:  2022-01-04       Impact factor: 60.615

Review 9.  Point-of-care diagnostics to improve maternal and neonatal health in low-resource settings.

Authors:  Catherine E Majors; Chelsey A Smith; Mary E Natoli; Kathryn A Kundrod; Rebecca Richards-Kortum
Journal:  Lab Chip       Date:  2017-10-11       Impact factor: 6.799

Review 10.  Bridging the gap between development of point-of-care nucleic acid testing and patient care for sexually transmitted infections.

Authors:  Kuangwen Hsieh; Johan H Melendez; Charlotte A Gaydos; Tza-Huei Wang
Journal:  Lab Chip       Date:  2022-02-01       Impact factor: 7.517

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