Literature DB >> 28457126

Peroxide Activation for Electrophilic Reactivity by the Binuclear Non-heme Iron Enzyme AurF.

Kiyoung Park1,2, Ning Li3, Yeonju Kwak1, Martin Srnec1, Caleb B Bell1, Lei V Liu1, Shaun D Wong1, Yoshitaka Yoda4, Shinji Kitao5, Makoto Seto5, Michael Hu6, Jiyong Zhao6, Carsten Krebs3,7, J Martin Bollinger3,7, Edward I Solomon1,8.   

Abstract

Binuclear non-heme n class="Chemical">iron enzymes activate O2 for diverse chemistries that include oxygenation of organic substrates and hydrogen atom abstraction. This process often involves the formation of peroxo-bridged biferric intermediates, only some of which can perform electrophilic reactions. To elucidate the geometric and electronic structural requirements to activate peroxo reactivity, the active peroxo intermediate in 4-aminobenzoate N-oxygenase (AurF) has been characterized spectroscopically and computationally. A magnetic circular dichroism study of reduced AurF shows that its electronic and geometric structures are poised to react rapidly with O2. Nuclear resonance vibrational spectroscopic definition of the peroxo intermediate formed in this reaction shows that the active intermediate has a protonated peroxo bridge. Density functional theory computations on the structure established here show that the protonation activates peroxide for electrophilic/single-electron-transfer reactivity. This activation of peroxide by protonation is likely also relevant to the reactive peroxo intermediates in other binuclear non-heme iron enzymes.

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Year:  2017        PMID: 28457126      PMCID: PMC5843474          DOI: 10.1021/jacs.7b02997

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  44 in total

1.  Dioxygen Activation by Enzymes Containing Binuclear Non-Heme Iron Clusters.

Authors:  Bradley J. Wallar; John D. Lipscomb
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Insights into the different dioxygen activation pathways of methane and toluene monooxygenase hydroxylases.

Authors:  Arteum D Bochevarov; Jianing Li; Woon Ju Song; Richard A Friesner; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2011-04-25       Impact factor: 15.419

3.  (Mu-1,2-peroxo)diiron(III/III) complex as a precursor to the diiron(III/IV) intermediate X in the assembly of the iron-radical cofactor of ribonucleotide reductase from mouse.

Authors:  Danny Yun; Ricardo García-Serres; Brandon M Chicalese; Young H An; Boi Hanh Huynh; J Martin Bollinger
Journal:  Biochemistry       Date:  2007-01-27       Impact factor: 3.162

4.  In-crystal reaction cycle of a toluene-bound diiron hydroxylase.

Authors:  Justin F Acheson; Lucas J Bailey; Thomas C Brunold; Brian G Fox
Journal:  Nature       Date:  2017-03-27       Impact factor: 49.962

Review 5.  Cyanobacterial alkane biosynthesis further expands the catalytic repertoire of the ferritin-like 'di-iron-carboxylate' proteins.

Authors:  Carsten Krebs; J Martin Bollinger; Squire J Booker
Journal:  Curr Opin Chem Biol       Date:  2011-04       Impact factor: 8.822

6.  Use of a chemical trigger for electron transfer to characterize a precursor to cluster X in assembly of the iron-radical cofactor of Escherichia coli ribonucleotide reductase.

Authors:  Lana Saleh; Carsten Krebs; Brenda A Ley; Sunail Naik; Boi Hanh Huynh; J Martin Bollinger
Journal:  Biochemistry       Date:  2004-05-25       Impact factor: 3.162

7.  Revisiting the mechanism of dioxygen activation in soluble methane monooxygenase from M. capsulatus (Bath): evidence for a multi-step, proton-dependent reaction pathway.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Biochemistry       Date:  2009-12-29       Impact factor: 3.162

8.  CD and MCD studies of the effects of component B variant binding on the biferrous active site of methane monooxygenase.

Authors:  Natasa Mitić; Jennifer K Schwartz; Brian J Brazeau; John D Lipscomb; Edward I Solomon
Journal:  Biochemistry       Date:  2008-07-16       Impact factor: 3.162

9.  Characterization of the arene-oxidizing intermediate in ToMOH as a diiron(III) species.

Authors:  Leslie J Murray; Sunil G Naik; Danilo O Ortillo; Ricardo García-Serres; Jessica K Lee; Boi Hanh Huynh; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2007-10-30       Impact factor: 15.419

10.  Electronic and spectroscopic studies of the non-heme reduced binuclear iron sites of two ribonucleotide reductase variants: comparison to reduced methane monooxygenase and contributions to O2 reactivity.

Authors:  Pin-Pin Wei; Andrew J Skulan; Natasa Mitić; Yi-Shan Yang; Lana Saleh; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

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  17 in total

Review 1.  Dioxygen Activation by Nonheme Diiron Enzymes: Diverse Dioxygen Adducts, High-Valent Intermediates, and Related Model Complexes.

Authors:  Andrew J Jasniewski; Lawrence Que
Journal:  Chem Rev       Date:  2018-02-05       Impact factor: 60.622

2.  Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities.

Authors:  Konstantinos D Vogiatzis; Mikhail V Polynski; Justin K Kirkland; Jacob Townsend; Ali Hashemi; Chong Liu; Evgeny A Pidko
Journal:  Chem Rev       Date:  2018-10-30       Impact factor: 60.622

3.  In Vitro Reconstitution Reveals a Central Role for the N-Oxygenase PvfB in (Dihydro)pyrazine-N-oxide and Valdiazen Biosynthesis.

Authors:  Gina L Morgan; Bo Li
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-18       Impact factor: 15.336

4.  Characterization and Crystal Structure of a Nonheme Diiron Monooxygenase Involved in Platensimycin and Platencin Biosynthesis.

Authors:  Liao-Bin Dong; Yu-Chen Liu; Alexis J Cepeda; Edward Kalkreuter; Ming-Rong Deng; Jeffrey D Rudolf; Changsoo Chang; Andrzej Joachimiak; George N Phillips; Ben Shen
Journal:  J Am Chem Soc       Date:  2019-07-23       Impact factor: 15.419

5.  Nuclear Resonance Vibrational Spectroscopy Definition of O2 Intermediates in an Extradiol Dioxygenase: Correlation to Crystallography and Reactivity.

Authors:  Kyle D Sutherlin; Yuko Wasada-Tsutsui; Michael M Mbughuni; Melanie S Rogers; Kiyoung Park; Lei V Liu; Yeonju Kwak; Martin Srnec; Lars H Böttger; Mathieu Frenette; Yoshitaka Yoda; Yasuhiro Kobayashi; Masayuki Kurokuzu; Makina Saito; Makoto Seto; Michael Hu; Jiyong Zhao; E Ercan Alp; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2018-11-26       Impact factor: 15.419

6.  Proton-Electron Transfer to the Active Site Is Essential for the Reaction Mechanism of Soluble Δ9-Desaturase.

Authors:  Daniel Bím; Jakub Chalupský; Martin Culka; Edward I Solomon; Lubomír Rulíšek; Martin Srnec
Journal:  J Am Chem Soc       Date:  2020-05-29       Impact factor: 15.419

Review 7.  Diiron monooxygenases in natural product biosynthesis.

Authors:  Anna J Komor; Andrew J Jasniewski; Lawrence Que; John D Lipscomb
Journal:  Nat Prod Rep       Date:  2018-07-18       Impact factor: 13.423

8.  Key Structural Motifs Balance Metal Binding and Oxidative Reactivity in a Heterobimetallic Mn/Fe Protein.

Authors:  Effie C Kisgeropoulos; Julia J Griese; Zachary R Smith; Rui M M Branca; Camille R Schneider; Martin Högbom; Hannah S Shafaat
Journal:  J Am Chem Soc       Date:  2020-03-09       Impact factor: 15.419

9.  NRVS Studies of the Peroxide Shunt Intermediate in a Rieske Dioxygenase and Its Relation to the Native FeII O2 Reaction.

Authors:  Kyle D Sutherlin; Brent S Rivard; Lars H Böttger; Lei V Liu; Melanie S Rogers; Martin Srnec; Kiyoung Park; Yoshitaka Yoda; Shinji Kitao; Yasuhiro Kobayashi; Makina Saito; Makoto Seto; Michael Hu; Jiyong Zhao; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2018-04-11       Impact factor: 15.419

10.  A Peroxodiiron(III/III) Intermediate Mediating Both N-Hydroxylation Steps in Biosynthesis of the N-Nitrosourea Pharmacophore of Streptozotocin by the Multi-domain Metalloenzyme SznF.

Authors:  Molly J McBride; Debangsu Sil; Tai L Ng; Anne Marie Crooke; Grace E Kenney; Christina R Tysoe; Bo Zhang; Emily P Balskus; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2020-06-24       Impact factor: 15.419

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