Literature DB >> 18627173

CD and MCD studies of the effects of component B variant binding on the biferrous active site of methane monooxygenase.

Natasa Mitić1, Jennifer K Schwartz, Brian J Brazeau, John D Lipscomb, Edward I Solomon.   

Abstract

The multicomponent soluble form of methane monooxygenase (sMMO) catalyzes the oxidation of methane through the activation of O 2 at a nonheme biferrous center in the hydroxylase component, MMOH. Reactivity is limited without binding of the sMMO effector protein, MMOB. Past studies show that mutations of specific MMOB surface residues cause large changes in the rates of individual steps in the MMOH reaction cycle. To define the structural and mechanistic bases for these observations, CD, MCD, and VTVH MCD spectroscopies coupled with ligand-field (LF) calculations are used to elucidate changes occurring near and at the MMOH biferrous cluster upon binding of MMOB and the MMOB variants. Perturbations to both the CD and MCD are observed upon binding wild-type MMOB and the MMOB variant that similarly increases O 2 reactivity. MMOB variants that do not greatly increase O 2 reactivity fail to cause one or both of these changes. LF calculations indicate that reorientation of the terminal glutamate on Fe2 reproduces the spectral perturbations in MCD. Although this structural change allows O 2 to bridge the diiron site and shifts the redox active orbitals for good overlap, it is not sufficient for enhanced O 2 reactivity of the enzyme. Binding of the T111Y-MMOB variant to MMOH induces the MCD, but not CD changes, and causes only a small increase in reactivity. Thus, both the geometric rearrangement at Fe2 (observed in MCD) coupled with a more global conformational change that may control O 2 access (probed by CD), induced by MMOB binding, are critical factors in the reactivity of sMMO.

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Year:  2008        PMID: 18627173      PMCID: PMC2614212          DOI: 10.1021/bi800818w

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  39 in total

1.  Kinetics and activation thermodynamics of methane monooxygenase compound Q formation and reaction with substrates.

Authors:  B J Brazeau; J D Lipscomb
Journal:  Biochemistry       Date:  2000-11-07       Impact factor: 3.162

2.  Dioxygen Activation by Enzymes Containing Binuclear Non-Heme Iron Clusters.

Authors:  Bradley J. Wallar; John D. Lipscomb
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Crystal structures of the methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath): implications for substrate gating and component interactions.

Authors:  A C Rosenzweig; H Brandstetter; D A Whittington; P Nordlund; S J Lippard; C A Frederick
Journal:  Proteins       Date:  1997-10

4.  Methane monooxygenase hydroxylase and B component interactions.

Authors:  Jingyan Zhang; Bradley J Wallar; Codrina V Popescu; Daniel B Renner; David D Thomas; John D Lipscomb
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

5.  New findings in methane-utilizing bacteria highlight their importance in the biosphere and their commercial potential.

Authors:  I J Higgins; D J Best; R C Hammond
Journal:  Nature       Date:  1980-08-07       Impact factor: 49.962

6.  Further characterisation of the FAD and Fe2S2 redox centres of component C, the NADH:acceptor reductase of the soluble methane monooxygenase of Methylococcus capsulatus (Bath).

Authors:  J Lund; H Dalton
Journal:  Eur J Biochem       Date:  1985-03-01

7.  Crystal structures of the soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath) demonstrating geometrical variability at the dinuclear iron active site.

Authors:  D A Whittington; S J Lippard
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

8.  MCD C-Term Signs, Saturation Behavior, and Determination of Band Polarizations in Randomly Oriented Systems with Spin S >/= (1)/(2). Applications to S = (1)/(2) and S = (5)/(2).

Authors:  Frank Neese; Edward I. Solomon
Journal:  Inorg Chem       Date:  1999-04-19       Impact factor: 5.165

9.  Regulation of methane monooxygenase catalysis based on size exclusion and quantum tunneling.

Authors:  Hui Zheng; John D Lipscomb
Journal:  Biochemistry       Date:  2006-02-14       Impact factor: 3.162

10.  Electronic and spectroscopic studies of the non-heme reduced binuclear iron sites of two ribonucleotide reductase variants: comparison to reduced methane monooxygenase and contributions to O2 reactivity.

Authors:  Pin-Pin Wei; Andrew J Skulan; Natasa Mitić; Yi-Shan Yang; Lana Saleh; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

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  24 in total

1.  Systematic Perturbations of Binuclear Non-heme Iron Sites: Structure and Dioxygen Reactivity of de Novo Due Ferri Proteins.

Authors:  Rae Ana Snyder; Justine Betzu; Susan E Butch; Amanda J Reig; William F DeGrado; Edward I Solomon
Journal:  Biochemistry       Date:  2015-07-24       Impact factor: 3.162

2.  High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States.

Authors:  Vivek Srinivas; Rahul Banerjee; Hugo Lebrette; Jason C Jones; Oskar Aurelius; In-Sik Kim; Cindy C Pham; Sheraz Gul; Kyle D Sutherlin; Asmit Bhowmick; Juliane John; Esra Bozkurt; Thomas Fransson; Pierre Aller; Agata Butryn; Isabel Bogacz; Philipp Simon; Stephen Keable; Alexander Britz; Kensuke Tono; Kyung Sook Kim; Sang-Youn Park; Sang Jae Lee; Jaehyun Park; Roberto Alonso-Mori; Franklin D Fuller; Alexander Batyuk; Aaron S Brewster; Uwe Bergmann; Nicholas K Sauter; Allen M Orville; Vittal K Yachandra; Junko Yano; John D Lipscomb; Jan Kern; Martin Högbom
Journal:  J Am Chem Soc       Date:  2020-08-05       Impact factor: 15.419

3.  Multiple roles of component proteins in bacterial multicomponent monooxygenases: phenol hydroxylase and toluene/o-xylene monooxygenase from Pseudomonas sp. OX1.

Authors:  Christine E Tinberg; Woon Ju Song; Viviana Izzo; Stephen J Lippard
Journal:  Biochemistry       Date:  2011-03-02       Impact factor: 3.162

4.  A Carboxylate Shift Regulates Dioxygen Activation by the Diiron Nonheme β-Hydroxylase CmlA upon Binding of a Substrate-Loaded Nonribosomal Peptide Synthetase.

Authors:  Andrew J Jasniewski; Cory J Knoot; John D Lipscomb; Lawrence Que
Journal:  Biochemistry       Date:  2016-10-07       Impact factor: 3.162

5.  Intermediate P* from soluble methane monooxygenase contains a diferrous cluster.

Authors:  Rahul Banerjee; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2013-06-13       Impact factor: 3.162

6.  Kinetic characterization of the soluble butane monooxygenase from Thauera butanivorans, formerly 'Pseudomonas butanovora'.

Authors:  Richard B Cooley; Bradley L Dubbels; Luis A Sayavedra-Soto; Peter J Bottomley; Daniel J Arp
Journal:  Microbiology (Reading)       Date:  2009-04-21       Impact factor: 2.777

7.  Spectroscopic definition of the biferrous and biferric sites in de novo designed four-helix bundle DFsc peptides: implications for O2 reactivity of binuclear non-heme iron enzymes.

Authors:  Caleb B Bell; Jennifer R Calhoun; Elena Bobyr; Pin-Pin Wei; Britt Hedman; Keith O Hodgson; William F Degrado; Edward I Solomon
Journal:  Biochemistry       Date:  2009-01-13       Impact factor: 3.162

Review 8.  Methane-Oxidizing Enzymes: An Upstream Problem in Biological Gas-to-Liquids Conversion.

Authors:  Thomas J Lawton; Amy C Rosenzweig
Journal:  J Am Chem Soc       Date:  2016-07-19       Impact factor: 15.419

Review 9.  Structure/function correlations over binuclear non-heme iron active sites.

Authors:  Edward I Solomon; Kiyoung Park
Journal:  J Biol Inorg Chem       Date:  2016-07-01       Impact factor: 3.358

10.  Structural Studies of the Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel.

Authors:  Jason C Jones; Rahul Banerjee; Ke Shi; Hideki Aihara; John D Lipscomb
Journal:  Biochemistry       Date:  2020-07-30       Impact factor: 3.162

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