Literature DB >> 31291107

Characterization and Crystal Structure of a Nonheme Diiron Monooxygenase Involved in Platensimycin and Platencin Biosynthesis.

Liao-Bin Dong, Yu-Chen Liu, Alexis J Cepeda, Edward Kalkreuter, Ming-Rong Deng, Jeffrey D Rudolf, Changsoo Chang1, Andrzej Joachimiak1, George N Phillips2, Ben Shen.   

Abstract

Nonheme diiron monooxygenases make up a rapidly growing family of oxygenases that are rarely identified in secondary metabolism. Herein, we report the in vivo, in vitro, and structural characterizations of a nonheme diiron monooxygenase, PtmU3, that installs a C-5 β-hydroxyl group in the unified biosynthesis of platensimycin and platencin, two highly functionalized diterpenoids that act as potent and selective inhibitors of bacterial and mammalian fatty acid synthases. This hydroxylation sets the stage for the subsequent A-ring cleavage step key to the unique diterpene-derived scaffolds of platensimycin and platencin. PtmU3 adopts an unprecedented triosephosphate isomerase (TIM) barrel structural fold for this class of enzymes and possesses a noncanonical diiron active site architecture with a saturated six-coordinate iron center lacking a μ-oxo bridge. This study reveals the first member of a previously unidentified superfamily of TIM-barrel-fold enzymes for metal-dependent dioxygen activation, with the majority predicted to act on CoA-linked substrates, thus expanding our knowledge of nature's repertoire of nonheme diiron monooxygenases and TIM-barrel-fold enzymes.

Entities:  

Year:  2019        PMID: 31291107      PMCID: PMC6743330          DOI: 10.1021/jacs.9b06183

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  30 in total

Review 1.  One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions.

Authors:  Nozomi Nagano; Christine A Orengo; Janet M Thornton
Journal:  J Mol Biol       Date:  2002-08-30       Impact factor: 5.469

2.  Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Authors:  Paul Shannon; Andrew Markiel; Owen Ozier; Nitin S Baliga; Jonathan T Wang; Daniel Ramage; Nada Amin; Benno Schwikowski; Trey Ideker
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

Review 3.  Structural and catalytic diversity within the amidohydrolase superfamily.

Authors:  Clara M Seibert; Frank M Raushel
Journal:  Biochemistry       Date:  2005-05-03       Impact factor: 3.162

4.  Crystal structure of a substrate complex of myo-inositol oxygenase, a di-iron oxygenase with a key role in inositol metabolism.

Authors:  Peter M Brown; Tom T Caradoc-Davies; James M J Dickson; Garth J S Cooper; Kerry M Loomes; Edward N Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-29       Impact factor: 11.205

5.  Platensimycin is a selective FabF inhibitor with potent antibiotic properties.

Authors:  Jun Wang; Stephen M Soisson; Katherine Young; Wesley Shoop; Srinivas Kodali; Andrew Galgoci; Ronald Painter; Gopalakrishnan Parthasarathy; Yui S Tang; Richard Cummings; Sookhee Ha; Karen Dorso; Mary Motyl; Hiranthi Jayasuriya; John Ondeyka; Kithsiri Herath; Chaowei Zhang; Lorraine Hernandez; John Allocco; Angela Basilio; José R Tormo; Olga Genilloud; Francisca Vicente; Fernando Pelaez; Lawrence Colwell; Sang Ho Lee; Bruce Michael; Thomas Felcetto; Charles Gill; Lynn L Silver; Jeffery D Hermes; Ken Bartizal; John Barrett; Dennis Schmatz; Joseph W Becker; Doris Cully; Sheo B Singh
Journal:  Nature       Date:  2006-05-18       Impact factor: 49.962

6.  A family of diiron monooxygenases catalyzing amino acid beta-hydroxylation in antibiotic biosynthesis.

Authors:  Thomas M Makris; Mrinmoy Chakrabarti; Eckard Münck; John D Lipscomb
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

7.  In vitro reconstitution and crystal structure of p-aminobenzoate N-oxygenase (AurF) involved in aureothin biosynthesis.

Authors:  Yoo Seong Choi; Houjin Zhang; Joseph S Brunzelle; Satish K Nair; Huimin Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-05       Impact factor: 11.205

8.  Discovery of platencin, a dual FabF and FabH inhibitor with in vivo antibiotic properties.

Authors:  Jun Wang; Srinivas Kodali; Sang Ho Lee; Andrew Galgoci; Ronald Painter; Karen Dorso; Fred Racine; Mary Motyl; Lorraine Hernandez; Elizabeth Tinney; Steven L Colletti; Kithsiri Herath; Richard Cummings; Oscar Salazar; Ignacio González; Angela Basilio; Francisca Vicente; Olga Genilloud; Fernando Pelaez; Hiranthi Jayasuriya; Katherine Young; Doris F Cully; Sheo B Singh
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-24       Impact factor: 11.205

9.  Structure of a dinuclear iron cluster-containing β-hydroxylase active in antibiotic biosynthesis.

Authors:  Thomas M Makris; Cory J Knoot; Carrie M Wilmot; John D Lipscomb
Journal:  Biochemistry       Date:  2013-09-11       Impact factor: 3.162

10.  Biosynthetic origin of the rare nitroaryl moiety of the polyketide antibiotic aureothin: involvement of an unprecedented N-oxygenase.

Authors:  Jing He; Christian Hertweck
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

View more
  5 in total

1.  In Vitro Reconstitution Reveals a Central Role for the N-Oxygenase PvfB in (Dihydro)pyrazine-N-oxide and Valdiazen Biosynthesis.

Authors:  Gina L Morgan; Bo Li
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-18       Impact factor: 15.336

2.  PtmC Catalyzes the Final Step of Thioplatensimycin, Thioplatencin, and Thioplatensilin Biosynthesis and Expands the Scope of Arylamine N-Acetyltransferases.

Authors:  Cheng-Jian Zheng; Edward Kalkreuter; Bo-Yi Fan; Yu-Chen Liu; Liao-Bin Dong; Ben Shen
Journal:  ACS Chem Biol       Date:  2020-12-14       Impact factor: 5.100

Review 3.  Bacterial terpenome.

Authors:  Jeffrey D Rudolf; Tyler A Alsup; Baofu Xu; Zining Li
Journal:  Nat Prod Rep       Date:  2021-05-26       Impact factor: 15.111

4.  A three-component monooxygenase from Rhodococcus wratislaviensis may expand industrial applications of bacterial enzymes.

Authors:  Makoto Hibi; Dai Fukuda; Chihiro Kenchu; Masutoshi Nojiri; Ryotaro Hara; Michiki Takeuchi; Shunsuke Aburaya; Wataru Aoki; Kimihiko Mizutani; Yoshihiko Yasohara; Mitsuyoshi Ueda; Bunzo Mikami; Satomi Takahashi; Jun Ogawa
Journal:  Commun Biol       Date:  2021-01-04

5.  Structure and assembly of the diiron cofactor in the heme-oxygenase-like domain of the N-nitrosourea-producing enzyme SznF.

Authors:  Molly J McBride; Sarah R Pope; Kai Hu; C Denise Okafor; Emily P Balskus; J Martin Bollinger; Amie K Boal
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-26       Impact factor: 12.779

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.