Literature DB >> 28445788

An emerging role for the ribosome as a nexus for post-translational modifications.

Deniz Simsek1, Maria Barna2.   

Abstract

The ribosome is one of life's most ancient molecular machines that has historically been viewed as a backstage participant in gene regulation, translating the genetic code across all kingdoms of life in a rote-like fashion. However, recent studies suggest that intrinsic components of the ribosome can be regulated and diversified as a means to intricately control the expression of the cellular proteome. In this review, we discuss advances in the characterization of ribosome post-translational modifications (PTMs) from past to present. We specifically focus on emerging examples of ribosome phosphorylation and ubiquitylation, which are beginning to showcase that PTMs of the ribosome are versatile, may have functional consequences for translational control, and are intimately linked to human disease. We further highlight the key questions that remain to be addressed to gain a more complete picture of the array of ribosome PTMs and the upstream enzymes that control them, which may endow ribosomes with greater regulatory potential in gene regulation and control of cellular homeostasis.
Copyright © 2017. Published by Elsevier Ltd.

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Year:  2017        PMID: 28445788      PMCID: PMC5731828          DOI: 10.1016/j.ceb.2017.02.010

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  87 in total

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2.  Upf1 stimulates degradation of the product derived from aberrant messenger RNA containing a specific nonsense mutation by the proteasome.

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Journal:  EMBO Rep       Date:  2009-10-02       Impact factor: 8.807

3.  Nuclear export and cytoplasmic processing of precursors to the 40S ribosomal subunits in mammalian cells.

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Journal:  EMBO J       Date:  2005-07-28       Impact factor: 11.598

4.  Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.

Authors:  Guoqiang Xu; Jeremy S Paige; Samie R Jaffrey
Journal:  Nat Biotechnol       Date:  2010-07-18       Impact factor: 54.908

Review 5.  Ribosomal Protein S6 Phosphorylation: Four Decades of Research.

Authors:  Oded Meyuhas
Journal:  Int Rev Cell Mol Biol       Date:  2015-08-05       Impact factor: 6.813

Review 6.  The scanning mechanism of eukaryotic translation initiation.

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Journal:  Annu Rev Biochem       Date:  2014-01-29       Impact factor: 23.643

7.  The complexity of human ribosome biogenesis revealed by systematic nucleolar screening of Pre-rRNA processing factors.

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8.  Mechanism of eIF6 release from the nascent 60S ribosomal subunit.

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9.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

10.  Translation of CGA codon repeats in yeast involves quality control components and ribosomal protein L1.

Authors:  Daniel P Letzring; Andrew S Wolf; Christina E Brule; Elizabeth J Grayhack
Journal:  RNA       Date:  2013-07-03       Impact factor: 4.942

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  40 in total

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2.  Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress.

Authors:  Ye Zhou; Panagiotis L Kastritis; Shannon E Dougherty; Jonathan Bouvette; Allen L Hsu; Laura Burbaum; Shyamal Mosalaganti; Stefan Pfeffer; Wim J H Hagen; Friedrich Förster; Mario J Borgnia; Christine Vogel; Martin Beck; Alberto Bartesaghi; Gustavo M Silva
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-27       Impact factor: 11.205

Review 3.  Engineering the Translational Machinery for Biotechnology Applications.

Authors:  Tianwen Wang; Chen Liang; Yafei An; Sa Xiao; Hongjv Xu; Mengyuan Zheng; Lu Liu; Gaozhan Wang; Lei Nie
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Review 4.  Lighting up single-mRNA translation dynamics in living cells.

Authors:  Charlotte A Cialek; Amanda L Koch; Gabriel Galindo; Timothy J Stasevich
Journal:  Curr Opin Genet Dev       Date:  2020-05-11       Impact factor: 5.578

Review 5.  Ribosome Stoichiometry: From Form to Function.

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Journal:  Trends Biochem Sci       Date:  2018-11-22       Impact factor: 13.807

6.  Sirtuin 7 promotes 45S pre-rRNA cleavage at site 2 and determines the processing pathway.

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Review 7.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

Review 8.  The Discovery of Ribosome Heterogeneity and Its Implications for Gene Regulation and Organismal Life.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Mol Cell       Date:  2018-08-02       Impact factor: 17.970

9.  Proteomic and mechanistic dissection of the poxvirus-customized ribosome.

Authors:  Stephen DiGiuseppe; Madeline G Rollins; Helen Astar; Natalia Khalatyan; Jeffrey N Savas; Derek Walsh
Journal:  J Cell Sci       Date:  2020-07-09       Impact factor: 5.285

10.  High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress.

Authors:  Colin Chih-Chien Wu; Boris Zinshteyn; Karen A Wehner; Rachel Green
Journal:  Mol Cell       Date:  2019-01-24       Impact factor: 17.970

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