Literature DB >> 32408104

Lighting up single-mRNA translation dynamics in living cells.

Charlotte A Cialek1, Amanda L Koch1, Gabriel Galindo1, Timothy J Stasevich2.   

Abstract

Over the past five years, technological advances have made it possible to image the translation of single mRNA in the natural context of living cells. With these advances, researchers are beginning to shed light on when, where, and to what degree mRNA are translated with single-molecule precision. These works provide insight into the heterogeneity of translation amongst single transcripts, behavior that is averaged out in complementary bulk assays. In this review, we discuss the rapidly maturing field of live-cell, single-mRNA imaging of translation, beginning with a brief overview of recent technological advances. The remainder of the review focuses on the new biological insights gained from these technologies. We conclude with a discussion of the future of this technology.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2020        PMID: 32408104      PMCID: PMC7508770          DOI: 10.1016/j.gde.2020.04.003

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  68 in total

1.  An active role for the ribosome in determining the fate of oxidized mRNA.

Authors:  Carrie L Simms; Benjamin H Hudson; John W Mosior; Ali S Rangwala; Hani S Zaher
Journal:  Cell Rep       Date:  2014-11-13       Impact factor: 9.423

2.  Detection and quantification of RNA decay intermediates using XRN1-resistant reporter transcripts.

Authors:  Franka Voigt; Jennifer V Gerbracht; Volker Boehm; Ivana Horvathova; Jan Eglinger; Jeffrey A Chao; Niels H Gehring
Journal:  Nat Protoc       Date:  2019-04-24       Impact factor: 13.491

Review 3.  A guide to light-sheet fluorescence microscopy for multiscale imaging.

Authors:  Rory M Power; Jan Huisken
Journal:  Nat Methods       Date:  2017-03-31       Impact factor: 28.547

4.  Imaging individual mRNA molecules using multiple singly labeled probes.

Authors:  Arjun Raj; Patrick van den Bogaard; Scott A Rifkin; Alexander van Oudenaarden; Sanjay Tyagi
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

5.  Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling.

Authors:  Yoko Hayashi-Takanaka; Kazuo Yamagata; Teruhiko Wakayama; Timothy J Stasevich; Takashi Kainuma; Toshiki Tsurimoto; Makoto Tachibana; Yoichi Shinkai; Hitoshi Kurumizaka; Naohito Nozaki; Hiroshi Kimura
Journal:  Nucleic Acids Res       Date:  2011-05-16       Impact factor: 16.971

Review 6.  Cap-binding complex (CBC).

Authors:  Thomas Gonatopoulos-Pournatzis; Victoria H Cowling
Journal:  Biochem J       Date:  2014-01-15       Impact factor: 3.857

7.  Late Endosomes Act as mRNA Translation Platforms and Sustain Mitochondria in Axons.

Authors:  Jean-Michel Cioni; Julie Qiaojin Lin; Anne V Holtermann; Max Koppers; Maximilian A H Jakobs; Afnan Azizi; Benita Turner-Bridger; Toshiaki Shigeoka; Kristian Franze; William A Harris; Christine E Holt
Journal:  Cell       Date:  2019-01-03       Impact factor: 41.582

8.  Single-Molecule Imaging Uncovers Rules Governing Nonsense-Mediated mRNA Decay.

Authors:  Tim A Hoek; Deepak Khuperkar; Rik G H Lindeboom; Stijn Sonneveld; Bram M P Verhagen; Sanne Boersma; Michiel Vermeulen; Marvin E Tanenbaum
Journal:  Mol Cell       Date:  2019-05-30       Impact factor: 17.970

9.  Polysomes identified by live imaging of nascent peptides are stalled in hippocampal and cortical neurites.

Authors:  Jesse J Langille; Keren Ginzberg; Wayne S Sossin
Journal:  Learn Mem       Date:  2019-08-15       Impact factor: 2.460

10.  Multi-Color Single-Molecule Imaging Uncovers Extensive Heterogeneity in mRNA Decoding.

Authors:  Sanne Boersma; Deepak Khuperkar; Bram M P Verhagen; Stijn Sonneveld; Jonathan B Grimm; Luke D Lavis; Marvin E Tanenbaum
Journal:  Cell       Date:  2019-06-06       Impact factor: 41.582

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  5 in total

1.  A Multi-color Bicistronic Biosensor to Compare the Translation Dynamics of Different Open Reading Frames at Single-molecule Resolution in Live Cells.

Authors:  Amanda L Koch; Tatsuya Morisaki; Timothy J Stasevich
Journal:  Bio Protoc       Date:  2021-07-20

2.  Imaging translational control by Argonaute with single-molecule resolution in live cells.

Authors:  Charlotte A Cialek; Gabriel Galindo; Tatsuya Morisaki; Ning Zhao; Taiowa A Montgomery; Timothy J Stasevich
Journal:  Nat Commun       Date:  2022-06-10       Impact factor: 17.694

3.  A Picture Worth a Thousand Molecules-Integrative Technologies for Mapping Subcellular Molecular Organization and Plasticity in Developing Circuits.

Authors:  Jacqueline A Minehart; Colenso M Speer
Journal:  Front Synaptic Neurosci       Date:  2021-01-05

Review 4.  Natural Killer Cell Integrins and Their Functions in Tissue Residency.

Authors:  Michael J Shannon; Emily M Mace
Journal:  Front Immunol       Date:  2021-03-10       Impact factor: 7.561

Review 5.  Single-Molecule Imaging in Living Plant Cells: A Methodological Review.

Authors:  Ai-Yu Guo; Ya-Mei Zhang; Liu Wang; Di Bai; Ya-Peng Xu; Wen-Qiang Wu
Journal:  Int J Mol Sci       Date:  2021-05-11       Impact factor: 5.923

  5 in total

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