Literature DB >> 28412406

Chemical toxicity prediction for major classes of industrial chemicals: Is it possible to develop universal models covering cosmetics, drugs, and pesticides?

Vinicius M Alves1, Eugene N Muratov2, Alexey Zakharov3, Nail N Muratov4, Carolina H Andrade5, Alexander Tropsha6.   

Abstract

Computational models have earned broad acceptance for assessing chemical toxicity during early stages of drug discovery or environmental safety assessment. The majority of publicly available QSAR toxicity models have been developed for datasets including mostly drugs or drug-like compounds. We have evaluated and compared chemical spaces occupied by cosmetics, drugs, and pesticides, and explored whether current computational models of toxicity endpoints can be universally applied to all these chemicals. Our analysis of the chemical space overlap and applicability domain (AD) of models built previously for twenty different toxicity endpoints showed that most of these models afforded high coverage (>90%) for all three classes of compounds analyzed herein. Only T. pyriformis models demonstrated lower coverage for drugs and pesticides (38% and 54%, respectively). These results show that, for the most part, historical QSAR models built with data available for different toxicity endpoints can be used for toxicity assessment of novel chemicals irrespective of the intended commercial use; however, the AD restriction is necessary to assure the expected prediction accuracy. Local models may need to be developed to capture chemicals that appear as outliers with respect to global models.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Chemical space; Cosmetics; Drugs; Pesticides; Prediction; QSAR models

Mesh:

Substances:

Year:  2017        PMID: 28412406      PMCID: PMC5638676          DOI: 10.1016/j.fct.2017.04.008

Source DB:  PubMed          Journal:  Food Chem Toxicol        ISSN: 0278-6915            Impact factor:   6.023


  41 in total

1.  Rational selection of training and test sets for the development of validated QSAR models.

Authors:  Alexander Golbraikh; Min Shen; Zhiyan Xiao; Yun-De Xiao; Kuo-Hsiung Lee; Alexander Tropsha
Journal:  J Comput Aided Mol Des       Date:  2003 Feb-Apr       Impact factor: 3.686

2.  Current status of methods for defining the applicability domain of (quantitative) structure-activity relationships. The report and recommendations of ECVAM Workshop 52.

Authors:  Tatiana I Netzeva; Andrew Worth; Tom Aldenberg; Romualdo Benigni; Mark T D Cronin; Paolo Gramatica; Joanna S Jaworska; Scott Kahn; Gilles Klopman; Carol A Marchant; Glenn Myatt; Nina Nikolova-Jeliazkova; Grace Y Patlewicz; Roger Perkins; David Roberts; Terry Schultz; David W Stanton; Johannes J M van de Sandt; Weida Tong; Gilman Veith; Chihae Yang
Journal:  Altern Lab Anim       Date:  2005-04       Impact factor: 1.303

3.  Combinatorial QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis.

Authors:  Hao Zhu; Alexander Tropsha; Denis Fourches; Alexandre Varnek; Ester Papa; Paola Gramatica; Tomas Oberg; Phuong Dao; Artem Cherkasov; Igor V Tetko
Journal:  J Chem Inf Model       Date:  2008-03-01       Impact factor: 4.956

Review 4.  Predictive models for carcinogenicity and mutagenicity: frameworks, state-of-the-art, and perspectives.

Authors:  E Benfenati; R Benigni; D M Demarini; C Helma; D Kirkland; T M Martin; P Mazzatorta; G Ouédraogo-Arras; A M Richard; B Schilter; W G E J Schoonen; R D Snyder; C Yang
Journal:  J Environ Sci Health C Environ Carcinog Ecotoxicol Rev       Date:  2009-04       Impact factor: 3.781

5.  Improving confidence in (Q)SAR predictions under Canada's Chemicals Management Plan - a chemical space approach.

Authors:  S A Kulkarni; E Benfenati; T S Barton-Maclaren
Journal:  SAR QSAR Environ Res       Date:  2016-10-20       Impact factor: 3.000

6.  A structural basis for drug-induced long QT syndrome.

Authors:  J S Mitcheson; J Chen; M Lin; C Culberson; M C Sanguinetti
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

7.  Testing Chemical Safety: What Is Needed to Ensure the Widespread Application of Non-animal Approaches?

Authors:  Natalie Burden; Fiona Sewell; Kathryn Chapman
Journal:  PLoS Biol       Date:  2015-05-27       Impact factor: 8.029

8.  A new approach to radial basis function approximation and its application to QSAR.

Authors:  Alexey V Zakharov; Megan L Peach; Markus Sitzmann; Marc C Nicklaus
Journal:  J Chem Inf Model       Date:  2014-02-28       Impact factor: 4.956

9.  QSAR models of human data can enrich or replace LLNA testing for human skin sensitization.

Authors:  Vinicius M Alves; Stephen J Capuzzi; Eugene Muratov; Rodolpho C Braga; Thomas Thornton; Denis Fourches; Judy Strickland; Nicole Kleinstreuer; Carolina H Andrade; Alexander Tropsha
Journal:  Green Chem       Date:  2016-10-06       Impact factor: 10.182

Review 10.  Occupational safety and health, green chemistry, and sustainability: a review of areas of convergence.

Authors:  Paul A Schulte; Lauralynn T McKernan; Donna S Heidel; Andrea H Okun; Gary Scott Dotson; Thomas J Lentz; Charles L Geraci; Pamela E Heckel; Christine M Branche
Journal:  Environ Health       Date:  2013-04-15       Impact factor: 5.984

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  14 in total

Review 1.  QSAR without borders.

Authors:  Eugene N Muratov; Jürgen Bajorath; Robert P Sheridan; Igor V Tetko; Dmitry Filimonov; Vladimir Poroikov; Tudor I Oprea; Igor I Baskin; Alexandre Varnek; Adrian Roitberg; Olexandr Isayev; Stefano Curtarolo; Denis Fourches; Yoram Cohen; Alan Aspuru-Guzik; David A Winkler; Dimitris Agrafiotis; Artem Cherkasov; Alexander Tropsha
Journal:  Chem Soc Rev       Date:  2020-05-01       Impact factor: 54.564

Review 2.  In vitro to in vivo extrapolation for high throughput prioritization and decision making.

Authors:  Shannon M Bell; Xiaoqing Chang; John F Wambaugh; David G Allen; Mike Bartels; Kim L R Brouwer; Warren M Casey; Neepa Choksi; Stephen S Ferguson; Grazyna Fraczkiewicz; Annie M Jarabek; Alice Ke; Annie Lumen; Scott G Lynn; Alicia Paini; Paul S Price; Caroline Ring; Ted W Simon; Nisha S Sipes; Catherine S Sprankle; Judy Strickland; John Troutman; Barbara A Wetmore; Nicole C Kleinstreuer
Journal:  Toxicol In Vitro       Date:  2017-12-05       Impact factor: 3.500

3.  PreS/MD: Predictor of Sensitization Hazard for Chemical Substances Released From Medical Devices.

Authors:  Vinicius M Alves; Joyce V B Borba; Rodolpho C Braga; Daniel R Korn; Nicole Kleinstreuer; Kevin Causey; Alexander Tropsha; Diego Rua; Eugene N Muratov
Journal:  Toxicol Sci       Date:  2022-09-24       Impact factor: 4.109

Review 4.  Transfer and Multi-task Learning in QSAR Modeling: Advances and Challenges.

Authors:  Rodolfo S Simões; Vinicius G Maltarollo; Patricia R Oliveira; Kathia M Honorio
Journal:  Front Pharmacol       Date:  2018-02-06       Impact factor: 5.810

5.  Cheminformatics-driven discovery of polymeric micelle formulations for poorly soluble drugs.

Authors:  Vinicius M Alves; Duhyeong Hwang; Eugene Muratov; Marina Sokolsky-Papkov; Ekaterina Varlamova; Natasha Vinod; Chaemin Lim; Carolina H Andrade; Alexander Tropsha; Alexander Kabanov
Journal:  Sci Adv       Date:  2019-06-26       Impact factor: 14.136

6.  Single-Cell Analysis Reveals that Chronic Silver Nanoparticle Exposure Induces Cell Division Defects in Human Epithelial Cells.

Authors:  Ellen B Garcia; Cynthia Alms; Albert W Hinman; Conor Kelly; Adam Smith; Marina Vance; Jadranka Loncarek; Linsey C Marr; Daniela Cimini
Journal:  Int J Environ Res Public Health       Date:  2019-06-11       Impact factor: 3.390

7.  Assessing the calibration in toxicological in vitro models with conformal prediction.

Authors:  Ola Spjuth; Andrea Volkamer; Andrea Morger; Fredrik Svensson; Staffan Arvidsson McShane; Niharika Gauraha; Ulf Norinder
Journal:  J Cheminform       Date:  2021-04-29       Impact factor: 5.514

8.  In silico Assessment of Pharmacological Profile of Low Molecular Weight Oligo-Hydroxyalkanoates.

Authors:  Diana Larisa Roman; Adriana Isvoran; Mǎdǎlina Filip; Vasile Ostafe; Manfred Zinn
Journal:  Front Bioeng Biotechnol       Date:  2020-11-26

9.  Solubility and ADMET profiles of short oligomers of lactic acid.

Authors:  Daniela Dascălu; Diana Larisa Roman; Madalina Filip; Alecu Ciorsac; Vasile Ostafe; Adriana Isvoran
Journal:  ADMET DMPK       Date:  2020-06-28

10.  Analysis of Mercury in Skin Lightening Cream by Microwave Plasma Atomic Emission Spectroscopy (MP-AES).

Authors:  Hardoko I Qudus; Purwadi Purwadi; Iis Holilah; Sutopo Hadi
Journal:  Molecules       Date:  2021-05-24       Impact factor: 4.411

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