Literature DB >> 2840632

Resonance assignments of non-exchangeable protons in B type DNA oligomers, an overview.

F J van de Ven1, C W Hilbers.   

Abstract

The chemical shifts of 1H resonances of non exchangeable protons (except H5', H5" and adenine H2) of over six hundred nucleotides have been collected. The influence which the base of the nucleotide itself as well as the bases on its 5' and 3' side exert on the chemical shifts of the various resonances has been investigated. Most of the resonances appear to be predominantly influenced by only one base. For H2', H2", H3', H4' and H6/H8 this is the base of the central nucleotide, for H5(C) and CH3(T) it is the one on the 5' side and for H1' it is the one on the 3' side. Chemical shift distribution profiles are presented which allow an estimation of the probability of finding a particular resonance at a particular position in the spectrum.

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Year:  1988        PMID： 2840632      PMCID： PMC336824          DOI： 10.1093/nar/16.13.5713

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  41 in total

1.  Complete assignment of the non-exchangeable proton nmr resonances of [d-(GGAATTCC)]2 using two-dimensional nuclear overhauser effect spectra.

Authors:  M S Broido; G Zon; T L James
Journal:  Biochem Biophys Res Commun       Date:  1984-03-15       Impact factor: 3.575

2.  A two-dimensional NMR study of the solution structure of a DNA dodecamer comprising the concensus sequence for the specific DNA-binding sites of the glucocorticoid receptor protein.

Authors:  G M Clore; H Lauble; T A Frenkiel; A M Gronenborn
Journal:  Eur J Biochem       Date:  1984-12-17

3.  A base-centred explanation of the B-to-A transition in DNA.

Authors:  C R Calladine; H R Drew
Journal:  J Mol Biol       Date:  1984-09-25       Impact factor: 5.469

4.  A nuclear-Overhauser-enhancement study of the solution structure of a double-stranded DNA undecamer comprising a portion of the specific target site for the cyclic-AMP-receptor protein in the gal operon. Sequential resonance assignment.

Authors:  G M Clore; A M Gronenborn
Journal:  Eur J Biochem       Date:  1984-05-15

5.  Sequence-specific recognition of DNA: assignment of nonexchangeable proton resonances in the consensus Pribnow promoter DNA sequence by two-dimensional NMR.

Authors:  D E Wemmer; S H Chou; D R Hare; B R Reid
Journal:  Biochemistry       Date:  1984-05-08       Impact factor: 3.162

6.  Sequential resonance assignments in 1H NMR spectra of oligonucleotides by two-dimensional NMR spectroscopy.

Authors:  R M Scheek; R Boelens; N Russo; J H van Boom; R Kaptein
Journal:  Biochemistry       Date:  1984-03-27       Impact factor: 3.162

7.  Synthesis, complete 1H assignments and conformations of the self-complementary hexadeoxyribonucleotide [d(CpGpApTpCpG)]2 and its fragments by high field NMR.

Authors:  J W Lown; C C Hanstock; R C Bleackley; J L Imbach; B Rayner; J J Vasseur
Journal:  Nucleic Acids Res       Date:  1984-03-12       Impact factor: 16.971

8.  Comparison of the conformation of poly(dI-dC) with poly(dI-dbr5C) and the B and Z forms of poly(dG-dC). One- and two-dimensional NMR studies.

Authors:  P A Mirau; D R Kearns
Journal:  Biochemistry       Date:  1984-11-06       Impact factor: 3.162

9.  An investigation into the solution structures of two self-complementary DNA oligomers, 5'-d(C-G-T-A-C-G) and 5'-d(A-C-G-C-G-C-G-T), by means of nuclear-Overhauser-enhancement measurements.

Authors:  A M Gronenborn; G M Clore; B J Kimber
Journal:  Biochem J       Date:  1984-08-01       Impact factor: 3.857

10.  Sequential assignment of the 1H and 31P resonances of the double stranded deoxynucleotide d (ATGCAT)2 by 2D-NMR correlation spectroscopy.

Authors:  D Marion; G Lancelot
Journal:  Biochem Biophys Res Commun       Date:  1984-11-14       Impact factor: 3.575
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  6 in total

1.  Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation.

Authors:  J A Cromsigt; C W Hilbers; S S Wijmenga
Journal:  J Biomol NMR       Date:  2001-09       Impact factor: 2.835

2.  Analysis of (1)H chemical shifts in DNA: Assessment of the reliability of (1)H chemical shift calculations for use in structure refinement.

Authors:  S S Wijmenga; M Kruithof; C W Hilbers
Journal:  J Biomol NMR       Date:  1997-12       Impact factor: 2.835

3.  N.m.r. assignments and temperature-dependent conformational transitions of a mutant trp operator-promoter in solution.

Authors:  A N Lane
Journal:  Biochem J       Date:  1989-05-01       Impact factor: 3.857

4.  Highly diastereoselective synthesis of nucleoside adducts from the carcinogenic benzo[a]pyrene diol epoxide and a computational analysis.

Authors:  Mahesh K Lakshman; John C Keeler; Felix N Ngassa; John H Hilmer; Padmanava Pradhan; Barbara Zajc; Kathryn A Thomasson
Journal:  J Am Chem Soc       Date:  2007-01-10       Impact factor: 15.419

5.  Calibration of ring-current effects in proteins and nucleic acids.

Authors:  D A Case
Journal:  J Biomol NMR       Date:  1995-12       Impact factor: 2.835

6.  The role of the phosphorus BI-BII transition in protein-DNA recognition: the NF-kappaB complex.

Authors:  K Wecker; M C Bonnet; E F Meurs; M Delepierre
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971
  6 in total

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