Literature DB >> 6329268

Sequence-specific recognition of DNA: assignment of nonexchangeable proton resonances in the consensus Pribnow promoter DNA sequence by two-dimensional NMR.

D E Wemmer, S H Chou, D R Hare, B R Reid.   

Abstract

The resonances of most of the nonexchangeable protons of both + and - strands of the consensus Pribnow dodecamer d( CGTTATAATGCG ) have been assigned by two-dimensional nuclear magnetic resonance methods. Application of the two-dimensional nuclear Overhauser effect ( NOESY ) sequential connectivity method, combined with two-dimensional autocorrelated ( COSY ) spectra to reveal scalar-coupled protons, results in assignment of virtually all of the base and sugar protons, except the sugar C5 protons which are inadequately resolved. Analysis of the nuclear Overhauser data indicates that the helix assumes a fairly uniform B form conformation.

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Year:  1984        PMID： 6329268     DOI： 10.1021/bi00305a027

Source DB:  PubMed          Journal:  Biochemistry        ISSN： 0006-2960            Impact factor:   3.162


  10 in total

1.  Resonance assignments of non-exchangeable protons in B type DNA oligomers, an overview.

Authors:  F J van de Ven; C W Hilbers
Journal:  Nucleic Acids Res       Date:  1988-07-11       Impact factor: 16.971

2.  Study of structure, base-pair opening kinetics and proton exchange mechanism of the d-(AATTGCAATT) self-complementary oligodeoxynucleotide in solution.

Authors:  M Kochoyan; G Lancelot; J L Leroy
Journal:  Nucleic Acids Res       Date:  1988-08-11       Impact factor: 16.971

3.  2D-NMR studies of the unnatural duplex alpha-d(TCTAAAC)-beta-d(AGATTTG).

Authors:  G Lancelot; J L Guesnet; V Roig; N T Thuong
Journal:  Nucleic Acids Res       Date:  1987-09-25       Impact factor: 16.971

4.  Conformational properties of the -35 region of the trp promoter in solution: comparison of the wild-type sequence with an AT transversion.

Authors:  A N Lane; C J Bauer; T A Frenkiel; A J Birchall
Journal:  Eur Biophys J       Date:  1993       Impact factor: 1.733

5.  Hydrogen-bonding effects and 13C-NMR of the DNA double helix.

Authors:  P N Borer; S R LaPlante; N Zanatta; G C Levy
Journal:  Nucleic Acids Res       Date:  1988-03-25       Impact factor: 16.971

6.  Kinetics of the proton-deuteron exchange at position H8 of adenine and guanine in DNA.

Authors:  R Brandes; A Ehrenberg
Journal:  Nucleic Acids Res       Date:  1986-12-09       Impact factor: 16.971

7.  Alkyl phosphotriester modified oligodeoxyribonucleotides. VI. NMR and UV spectroscopic studies of ethyl phosphotriester (Et) modified Rp-Rp and Sp-Sp duplexes, (d[GGAA(Et)TTCC])2.

Authors:  M F Summers; C Powell; W Egan; R A Byrd; W D Wilson; G Zon
Journal:  Nucleic Acids Res       Date:  1986-09-25       Impact factor: 16.971

8.  Solution structure of oligonucleotides covalently linked to a psoralen derivative.

Authors:  O Bornet; C Prévost; F Vovelle; M Chassignol; N T Thuong; G Lancelot
Journal:  Nucleic Acids Res       Date:  1995-03-11       Impact factor: 16.971

9.  Phosphorothioate-modified oligodeoxyribonucleotides. III. NMR and UV spectroscopic studies of the Rp-Rp, Sp-Sp, and Rp-Sp duplexes, [d(GGSAATTCC)]2, derived from diastereomeric O-ethyl phosphorothioates.

Authors:  L A LaPlanche; T L James; C Powell; W D Wilson; B Uznanski; W J Stec; M F Summers; G Zon
Journal:  Nucleic Acids Res       Date:  1986-11-25       Impact factor: 16.971

10.  Structural consequences of a 3'-->3' DNA interstrand cross-link by a trinuclear platinum complex: unique formation of two such cross-links in a 10-mer duplex.

Authors:  Yun Qu; My-Chau Tran; Nicholas P Farrell
Journal:  J Biol Inorg Chem       Date:  2009-05-05       Impact factor: 3.358
  10 in total

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