Literature DB >> 28379727

Accelerating Precision Drug Development and Drug Repurposing by Leveraging Human Genetics.

Jill M Pulley1, Jana K Shirey-Rice1, Robert R Lavieri1, Rebecca N Jerome1, Nicole M Zaleski1, David M Aronoff2,3, Lisa Bastarache4, Xinnan Niu4, Kenneth J Holroyd1,5, Dan M Roden6, Eric P Skaar7, Colleen M Niswender8,9, Lawrence J Marnett10,11, Craig W Lindsley10,12, Leeland B Ekstrom1,13, Alan R Bentley5, Gordon R Bernard1,6, Charles C Hong14,15, Joshua C Denny4.   

Abstract

The potential impact of using human genetic data linked to longitudinal electronic medical records on drug development is extraordinary; however, the practical application of these data necessitates some organizational innovations. Vanderbilt has created resources such as an easily queried database of >2.6 million de-identified electronic health records linked to BioVU, which is a DNA biobank with more than 230,000 unique samples. To ensure these data are used to maximally benefit and accelerate both de novo drug discovery and drug repurposing efforts, we created the Accelerating Drug Development and Repurposing Incubator, a multidisciplinary think tank of experts in various therapeutic areas within both basic and clinical science as well as experts in legal, business, and other operational domains. The Incubator supports a diverse pipeline of drug indication finding projects, leveraging the natural experiment of human genetics.

Entities:  

Keywords:  BioVU; PheWAS; genetics; repurposing; translational research

Mesh:

Year:  2017        PMID: 28379727      PMCID: PMC5399743          DOI: 10.1089/adt.2016.772

Source DB:  PubMed          Journal:  Assay Drug Dev Technol        ISSN: 1540-658X            Impact factor:   1.738


  20 in total

1.  A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.

Authors:  Khader Shameer; Joshua C Denny; Keyue Ding; Hayan Jouni; David R Crosslin; Mariza de Andrade; Christopher G Chute; Peggy Peissig; Jennifer A Pacheco; Rongling Li; Lisa Bastarache; Abel N Kho; Marylyn D Ritchie; Daniel R Masys; Rex L Chisholm; Eric B Larson; Catherine A McCarty; Dan M Roden; Gail P Jarvik; Iftikhar J Kullo
Journal:  Hum Genet       Date:  2013-09-12       Impact factor: 4.132

Review 2.  Understanding the contribution of synonymous mutations to human disease.

Authors:  Zuben E Sauna; Chava Kimchi-Sarfaty
Journal:  Nat Rev Genet       Date:  2011-08-31       Impact factor: 53.242

3.  Genetics: a gene of rare effect.

Authors:  Stephen S Hall
Journal:  Nature       Date:  2013-04-11       Impact factor: 49.962

4.  Principles of human subjects protections applied in an opt-out, de-identified biobank.

Authors:  Jill Pulley; Ellen Clayton; Gordon R Bernard; Dan M Roden; Daniel R Masys
Journal:  Clin Transl Sci       Date:  2010-02       Impact factor: 4.689

5.  Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies.

Authors:  Joshua C Denny; Dana C Crawford; Marylyn D Ritchie; Suzette J Bielinski; Melissa A Basford; Yuki Bradford; High Seng Chai; Lisa Bastarache; Rebecca Zuvich; Peggy Peissig; David Carrell; Andrea H Ramirez; Jyotishman Pathak; Russell A Wilke; Luke Rasmussen; Xiaoming Wang; Jennifer A Pacheco; Abel N Kho; M Geoffrey Hayes; Noah Weston; Martha Matsumoto; Peter A Kopp; Katherine M Newton; Gail P Jarvik; Rongling Li; Teri A Manolio; Iftikhar J Kullo; Christopher G Chute; Rex L Chisholm; Eric B Larson; Catherine A McCarty; Daniel R Masys; Dan M Roden; Mariza de Andrade
Journal:  Am J Hum Genet       Date:  2011-10-07       Impact factor: 11.025

6.  Animal-based studies will be essential for precision medicine.

Authors:  K C Kent Lloyd; Peter N Robinson; Calum A MacRae
Journal:  Sci Transl Med       Date:  2016-08-17       Impact factor: 17.956

7.  Can you teach old drugs new tricks?

Authors:  Nicola Nosengo
Journal:  Nature       Date:  2016-06-16       Impact factor: 49.962

8.  PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.

Authors:  Joshua C Denny; Marylyn D Ritchie; Melissa A Basford; Jill M Pulley; Lisa Bastarache; Kristin Brown-Gentry; Deede Wang; Dan R Masys; Dan M Roden; Dana C Crawford
Journal:  Bioinformatics       Date:  2010-03-24       Impact factor: 6.937

9.  Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.

Authors:  Joshua C Denny; Lisa Bastarache; Marylyn D Ritchie; Robert J Carroll; Raquel Zink; Jonathan D Mosley; Julie R Field; Jill M Pulley; Andrea H Ramirez; Erica Bowton; Melissa A Basford; David S Carrell; Peggy L Peissig; Abel N Kho; Jennifer A Pacheco; Luke V Rasmussen; David R Crosslin; Paul K Crane; Jyotishman Pathak; Suzette J Bielinski; Sarah A Pendergrass; Hua Xu; Lucia A Hindorff; Rongling Li; Teri A Manolio; Christopher G Chute; Rex L Chisholm; Eric B Larson; Gail P Jarvik; Murray H Brilliant; Catherine A McCarty; Iftikhar J Kullo; Jonathan L Haines; Dana C Crawford; Daniel R Masys; Dan M Roden
Journal:  Nat Biotechnol       Date:  2013-12       Impact factor: 54.908

10.  Biobanks and electronic medical records: enabling cost-effective research.

Authors:  Erica Bowton; Julie R Field; Sunny Wang; Jonathan S Schildcrout; Sara L Van Driest; Jessica T Delaney; James Cowan; Peter Weeke; Jonathan D Mosley; Quinn S Wells; Jason H Karnes; Christian Shaffer; Josh F Peterson; Joshua C Denny; Dan M Roden; Jill M Pulley
Journal:  Sci Transl Med       Date:  2014-04-30       Impact factor: 17.956

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  16 in total

1.  Using Human 'Experiments of Nature' to Predict Drug Safety Issues: An Example with PCSK9 Inhibitors.

Authors:  Rebecca N Jerome; Jill M Pulley; Dan M Roden; Jana K Shirey-Rice; Lisa A Bastarache; Gordon R Bernard; Leeland B Ekstrom; William J Lancaster; Joshua C Denny
Journal:  Drug Saf       Date:  2018-03       Impact factor: 5.606

Review 2.  Motivation for Launching a Cancer Metastasis Inhibition (CMI) Program.

Authors:  Jill M Pulley; Rebecca N Jerome; Martin L Ogletree; Gordon R Bernard; Robert R Lavieri; Nicole M Zaleski; Charles C Hong; Jana K Shirey-Rice; Carlos L Arteaga; Ingrid A Mayer; Kenneth J Holroyd; Rebecca S Cook
Journal:  Target Oncol       Date:  2018-02       Impact factor: 4.493

3.  A Phenome-Wide Association Study Uncovers a Pathological Role of Coagulation Factor X during Acinetobacter baumannii Infection.

Authors:  Jacob E Choby; Andrew J Monteith; Lauren E Himmel; Paris Margaritis; Jana K Shirey-Rice; Andrea Pruijssers; Rebecca N Jerome; Jill Pulley; Eric P Skaar
Journal:  Infect Immun       Date:  2019-04-23       Impact factor: 3.441

4.  Leveraging Human Genetics to Identify Safety Signals Prior to Drug Marketing Approval and Clinical Use.

Authors:  Rebecca N Jerome; Meghan Morrison Joly; Nan Kennedy; Jana K Shirey-Rice; Dan M Roden; Gordon R Bernard; Kenneth J Holroyd; Joshua C Denny; Jill M Pulley
Journal:  Drug Saf       Date:  2020-06       Impact factor: 5.606

5.  When Enough Is Enough: Decision Criteria for Moving a Known Drug into Clinical Testing for a New Indication in the Absence of Preclinical Efficacy Data.

Authors:  Jill M Pulley; Rebecca N Jerome; Nicole M Zaleski; Jana K Shirey-Rice; Andrea J Pruijssers; Robert R Lavieri; Somsundaram N Chettiar; Helen M Naylor; David M Aronoff; David A Edwards; Colleen M Niswender; Laura L Dugan; Leslie J Crofford; Gordon R Bernard; Kenneth J Holroyd
Journal:  Assay Drug Dev Technol       Date:  2017-12-01       Impact factor: 1.738

Review 6.  Pharmacogenomics.

Authors:  Dan M Roden; Howard L McLeod; Mary V Relling; Marc S Williams; George A Mensah; Josh F Peterson; Sara L Van Driest
Journal:  Lancet       Date:  2019-08-05       Impact factor: 79.321

7.  Understanding enterprise data warehouses to support clinical and translational research.

Authors:  Thomas R Campion; Catherine K Craven; David A Dorr; Boyd M Knosp
Journal:  J Am Med Inform Assoc       Date:  2020-07-01       Impact factor: 7.942

Review 8.  CRISPR-Cas9: a promising genetic engineering approach in cancer research.

Authors:  Zubair Ahmed Ratan; Young-Jin Son; Mohammad Faisal Haidere; Bhuiyan Mohammad Mahtab Uddin; Md Abdullah Yusuf; Sojib Bin Zaman; Jong-Hoon Kim; Laila Anjuman Banu; Jae Youl Cho
Journal:  Ther Adv Med Oncol       Date:  2018-02-05       Impact factor: 8.168

Review 9.  Genome-wide and Phenome-wide Approaches to Understand Variable Drug Actions in Electronic Health Records.

Authors:  Jamie R Robinson; Joshua C Denny; Dan M Roden; Sara L Van Driest
Journal:  Clin Transl Sci       Date:  2017-11-17       Impact factor: 4.689

10.  Realizing drug repositioning by adapting a recommendation system to handle the process.

Authors:  Makbule Gulcin Ozsoy; Tansel Özyer; Faruk Polat; Reda Alhajj
Journal:  BMC Bioinformatics       Date:  2018-04-12       Impact factor: 3.169

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