Literature DB >> 24786321

Biobanks and electronic medical records: enabling cost-effective research.

Erica Bowton1, Julie R Field, Sunny Wang, Jonathan S Schildcrout, Sara L Van Driest, Jessica T Delaney, James Cowan, Peter Weeke, Jonathan D Mosley, Quinn S Wells, Jason H Karnes, Christian Shaffer, Josh F Peterson, Joshua C Denny, Dan M Roden, Jill M Pulley.   

Abstract

The use of electronic medical record data linked to biological specimens in health care settings is expected to enable cost-effective and rapid genomic analyses. Here, we present a model that highlights potential advantages for genomic discovery and describe the operational infrastructure that facilitated multiple simultaneous discovery efforts.

Entities:  

Mesh：

Year:  2014        PMID： 24786321      PMCID： PMC4226414          DOI： 10.1126/scitranslmed.3008604

Source DB:  PubMed          Journal:  Sci Transl Med        ISSN： 1946-6234            Impact factor:   17.956


  38 in total

1.  Protecting participants, promoting progress: public perspectives on community advisory boards (CABs) in biobanking.

Authors:  Christian M Simon; Elizabeth Newbury; Jamie L 'heureux
Journal:  J Empir Res Hum Res Ethics       Date:  2011-09       Impact factor: 1.742

Review 2.  Genome-wide association studies for complex traits: consensus, uncertainty and challenges.

Authors:  Mark I McCarthy; Gonçalo R Abecasis; Lon R Cardon; David B Goldstein; Julian Little; John P A Ioannidis; Joel N Hirschhorn
Journal:  Nat Rev Genet       Date:  2008-05       Impact factor: 53.242

3.  Extracting semantic lexicons from discharge summaries using machine learning and the C-Value method.

Authors:  Min Jiang; Josh C Denny; Buzhou Tang; Hongxin Cao; Hua Xu
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

Review 4.  Meta-analysis methods for genome-wide association studies and beyond.

Authors:  Evangelos Evangelou; John P A Ioannidis
Journal:  Nat Rev Genet       Date:  2013-05-09       Impact factor: 53.242

5.  The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies.

Authors:  Catherine A McCarty; Rex L Chisholm; Christopher G Chute; Iftikhar J Kullo; Gail P Jarvik; Eric B Larson; Rongling Li; Daniel R Masys; Marylyn D Ritchie; Dan M Roden; Jeffery P Struewing; Wendy A Wolf
Journal:  BMC Med Genomics       Date:  2011-01-26       Impact factor: 3.063

6.  A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose.

Authors:  Gregory M Cooper; Julie A Johnson; Taimour Y Langaee; Hua Feng; Ian B Stanaway; Ute I Schwarz; Marylyn D Ritchie; C Michael Stein; Dan M Roden; Joshua D Smith; David L Veenstra; Allan E Rettie; Mark J Rieder
Journal:  Blood       Date:  2008-06-05       Impact factor: 22.113

7.  Attitudes and perceptions of patients towards methods of establishing a DNA biobank.

Authors:  Jill M Pulley; Margaret M Brace; Gordon R Bernard; Dan R Masys
Journal:  Cell Tissue Bank       Date:  2007-10-25       Impact factor: 1.522

Review 8.  Evaluating temporal relations in clinical text: 2012 i2b2 Challenge.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2013-04-05       Impact factor: 4.497

9.  Genomic research and wide data sharing: views of prospective participants.

Authors:  Susan Brown Trinidad; Stephanie M Fullerton; Julie M Bares; Gail P Jarvik; Eric B Larson; Wylie Burke
Journal:  Genet Med       Date:  2010-08       Impact factor: 8.822

10.  Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.

Authors:  Joshua C Denny; Lisa Bastarache; Marylyn D Ritchie; Robert J Carroll; Raquel Zink; Jonathan D Mosley; Julie R Field; Jill M Pulley; Andrea H Ramirez; Erica Bowton; Melissa A Basford; David S Carrell; Peggy L Peissig; Abel N Kho; Jennifer A Pacheco; Luke V Rasmussen; David R Crosslin; Paul K Crane; Jyotishman Pathak; Suzette J Bielinski; Sarah A Pendergrass; Hua Xu; Lucia A Hindorff; Rongling Li; Teri A Manolio; Christopher G Chute; Rex L Chisholm; Eric B Larson; Gail P Jarvik; Murray H Brilliant; Catherine A McCarty; Iftikhar J Kullo; Jonathan L Haines; Dana C Crawford; Daniel R Masys; Dan M Roden
Journal:  Nat Biotechnol       Date:  2013-12       Impact factor: 54.908
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  81 in total

1.  iCHRCloud: Web & Mobile based Child Health Imprints for Smart Healthcare.

Authors:  Harpreet Singh; Raghuram Mallaiah; Gautam Yadav; Nitin Verma; Ashu Sawhney; Samir K Brahmachari
Journal:  J Med Syst       Date:  2017-11-29       Impact factor: 4.460

2.  Detecting the Presence of an Individual in Phenotypic Summary Data.

Authors:  Yongtai Liu; Zhiyu Wan; Weiyi Xia; Murat Kantarcioglu; Yevgeniy Vorobeychik; Ellen Wright Clayton; Abel Kho; David Carrell; Bradley A Malin
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

3.  A systematic literature review of machine learning in online personal health data.

Authors:  Zhijun Yin; Lina M Sulieman; Bradley A Malin
Journal:  J Am Med Inform Assoc       Date:  2019-06-01       Impact factor: 4.497

4.  Expanding Access to Large-Scale Genomic Data While Promoting Privacy: A Game Theoretic Approach.

Authors:  Zhiyu Wan; Yevgeniy Vorobeychik; Weiyi Xia; Ellen Wright Clayton; Murat Kantarcioglu; Bradley Malin
Journal:  Am J Hum Genet       Date:  2017-01-05       Impact factor: 11.025

5.  Information Technology for Clinical, Translational and Comparative Effectiveness Research. Findings from the Yearbook 2015 Section on Clinical Research Informatics.

Authors:  C Daniel; R Choquet
Journal:  Yearb Med Inform       Date:  2015-08-13

Review 6.  Surveying Recent Themes in Translational Bioinformatics: Big Data in EHRs, Omics for Drugs, and Personal Genomics.

Authors:  J C Denny
Journal:  Yearb Med Inform       Date:  2014-08-15

7.  Patient preferences toward an interactive e-consent application for research using electronic health records.

Authors:  Christopher A Harle; Elizabeth H Golembiewski; Kiarash P Rahmanian; Janice L Krieger; Dorothy Hagmajer; Arch G Mainous; Ray E Moseley
Journal:  J Am Med Inform Assoc       Date:  2018-03-01       Impact factor: 4.497

Review 8.  Phenome-Wide Association Studies as a Tool to Advance Precision Medicine.

Authors:  Joshua C Denny; Lisa Bastarache; Dan M Roden
Journal:  Annu Rev Genomics Hum Genet       Date:  2016-05-04       Impact factor: 8.929

9.  Merging Electronic Health Record Data and Genomics for Cardiovascular Research: A Science Advisory From the American Heart Association.

Authors:  Jennifer L Hall; John J Ryan; Bruce E Bray; Candice Brown; David Lanfear; L Kristin Newby; Mary V Relling; Neil J Risch; Dan M Roden; Stanley Y Shaw; James E Tcheng; Jessica Tenenbaum; Thomas N Wang; William S Weintraub
Journal:  Circ Cardiovasc Genet       Date:  2016-03-14

10.  Evaluating electronic health record data sources and algorithmic approaches to identify hypertensive individuals.

Authors:  Pedro L Teixeira; Wei-Qi Wei; Robert M Cronin; Huan Mo; Jacob P VanHouten; Robert J Carroll; Eric LaRose; Lisa A Bastarache; S Trent Rosenbloom; Todd L Edwards; Dan M Roden; Thomas A Lasko; Richard A Dart; Anne M Nikolai; Peggy L Peissig; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2016-08-07       Impact factor: 4.497
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