Literature DB >> 29982892

Genotyping DNA isolated from UV irradiated human bloodstains using whole genome amplification.

Seisaku Uchigasaki1, Jian Tie2, Erina Sobashima1, Naomi Shimada1.   

Abstract

Analysis of DNA polymorphisms are the primary technique used for personal identification in forensic cases. However, DNA samples collected as evidence from crime scenes are usually degraded by environmental, physical, and chemical factors, which may interfere with the PCR analysis and, consequently, personal identification. Whole genome amplification (WGA) is a useful method to amplify genomic DNA from samples containing low quantity and poor quality of DNA, and it approach that shows promise to overcome the limited small fragments based upon random fragmentation by universal priming sites. In this study, we describe the use of WGA to genotype 15 short tandem repeat (STR) loci from dried blood samples irradiated with different types of ultraviolet (UV) light (UVA, UVB, and UVC). The result showed that UVC was the most damaging to DNA, followed by UVB and UVA. Samples exposed to UVA could be genotyped for all STR loci with or without WGA. For UVB and UVC irradiated blood samples, a greater number of STR loci could be genotyped after WGA. Although it hard to amplified a few higher molecular weight alleles, overall, the WGA method was useful in genotyping template DNA of poor quality but low quantity.

Entities:  

Keywords:  Bloodstain; Forensic individual identification; STR profile; Ultraviolet light; Whole genome amplification

Mesh:

Substances:

Year:  2018        PMID: 29982892     DOI: 10.1007/s11033-018-4240-6

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  18 in total

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4.  Evaluating the performance of whole genome amplification for use in low template DNA typing.

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Review 5.  Single-Cell Whole-Genome Amplification and Sequencing: Methodology and Applications.

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Journal:  Annu Rev Genomics Hum Genet       Date:  2015-06-11       Impact factor: 8.929

6.  Assessment of DNA damage induced by terrestrial UV irradiation of dried bloodstains: forensic implications.

Authors:  Ashley Hall; Lynn M Sims; Jack Ballantyne
Journal:  Forensic Sci Int Genet       Date:  2013-09-06       Impact factor: 4.882

Review 7.  Forensic DNA Phenotyping: Predicting human appearance from crime scene material for investigative purposes.

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8.  Characterization of UVC-induced DNA damage in bloodstains: forensic implications.

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Journal:  Anal Bioanal Chem       Date:  2004-08-07       Impact factor: 4.142

9.  Characterization of whole genome amplified (WGA) DNA for use in genotyping assay development.

Authors:  Tao Han; Ching-Wei Chang; Joshua C Kwekel; Ying Chen; Yun Ge; Francisco Martinez-Murillo; Donna Roscoe; Zivana Težak; Reena Philip; Karen Bijwaard; James C Fuscoe
Journal:  BMC Genomics       Date:  2012-06-01       Impact factor: 3.969

10.  Comparison of whole genome amplification techniques for human single cell exome sequencing.

Authors:  Erik Borgström; Marta Paterlini; Jeff E Mold; Jonas Frisen; Joakim Lundeberg
Journal:  PLoS One       Date:  2017-02-16       Impact factor: 3.240

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  1 in total

Review 1.  New Perspectives for Whole Genome Amplification in Forensic STR Analysis.

Authors:  Richard Jäger
Journal:  Int J Mol Sci       Date:  2022-06-25       Impact factor: 6.208

  1 in total

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