Literature DB >> 28270969

Transfer learning based classification of optical coherence tomography images with diabetic macular edema and dry age-related macular degeneration.

S P K Karri1, Debjani Chakraborty2, Jyotirmoy Chatterjee1.   

Abstract

We present an algorithm for identifying retinal pathologies given retinal optical coherence tomography (OCT) images. Our approach fine-tunes a pre-trained convolutional neural network (CNN), GoogLeNet, to improve its prediction capability (compared to random initialization training) and identifies salient responses during prediction to understand learned filter characteristics. We considered a data set containing subjects with diabetic macular edema, or dry age-related macular degeneration, or no pathology. The fine-tuned CNN could effectively identify pathologies in comparison to classical learning. Our algorithm aims to demonstrate that models trained on non-medical images can be fine-tuned for classifying OCT images with limited training data.

Entities:  

Keywords:  (070.5010) Pattern recognition; (100.2960) Image analysis; (110.4500) Optical coherence tomography; (170.1610) Clinical applications; (170.4470) Ophthalmology

Year:  2017        PMID: 28270969      PMCID: PMC5330546          DOI: 10.1364/BOE.8.000579

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  26 in total

1.  Validated automatic segmentation of AMD pathology including drusen and geographic atrophy in SD-OCT images.

Authors:  Stephanie J Chiu; Joseph A Izatt; Rachelle V O'Connell; Katrina P Winter; Cynthia A Toth; Sina Farsiu
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-01-05       Impact factor: 4.799

2.  Quantitative classification of eyes with and without intermediate age-related macular degeneration using optical coherence tomography.

Authors:  Sina Farsiu; Stephanie J Chiu; Rachelle V O'Connell; Francisco A Folgar; Eric Yuan; Joseph A Izatt; Cynthia A Toth
Journal:  Ophthalmology       Date:  2013-08-29       Impact factor: 12.079

Review 3.  Dry age-related macular degeneration: mechanisms, therapeutic targets, and imaging.

Authors:  Catherine Bowes Rickman; Sina Farsiu; Cynthia A Toth; Mikael Klingeborn
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-12-13       Impact factor: 4.799

4.  Current status in diabetic macular edema treatments.

Authors:  Pedro Romero-Aroca
Journal:  World J Diabetes       Date:  2013-10-15

5.  Graph-based multi-surface segmentation of OCT data using trained hard and soft constraints.

Authors:  Pascal A Dufour; Lala Ceklic; Hannan Abdillahi; Simon Schröder; Sandro De Dzanet; Ute Wolf-Schnurrbusch; Jens Kowal
Journal:  IEEE Trans Med Imaging       Date:  2012-10-18       Impact factor: 10.048

6.  Probabilistic intra-retinal layer segmentation in 3-D OCT images using global shape regularization.

Authors:  Fabian Rathke; Stefan Schmidt; Christoph Schnörr
Journal:  Med Image Anal       Date:  2014-04-13       Impact factor: 8.545

7.  Spectral domain optical coherence tomography imaging of drusen in nonexudative age-related macular degeneration.

Authors:  Giovanni Gregori; Fenghua Wang; Philip J Rosenfeld; Zohar Yehoshua; Ninel Z Gregori; Brandon J Lujan; Carmen A Puliafito; William J Feuer
Journal:  Ophthalmology       Date:  2011-03-09       Impact factor: 12.079

Review 8.  State-of-the-art retinal optical coherence tomography.

Authors:  Wolfgang Drexler; James G Fujimoto
Journal:  Prog Retin Eye Res       Date:  2007-08-11       Impact factor: 21.198

Review 9.  Prevalence and causes of vision loss in high-income countries and in Eastern and Central Europe: 1990-2010.

Authors:  Rupert R A Bourne; Jost B Jonas; Seth R Flaxman; Jill Keeffe; Janet Leasher; Kovin Naidoo; Maurizio B Parodi; Konrad Pesudovs; Holly Price; Richard A White; Tien Y Wong; Serge Resnikoff; Hugh R Taylor
Journal:  Br J Ophthalmol       Date:  2014-03-24       Impact factor: 4.638

10.  Wavelet denoising of multiframe optical coherence tomography data.

Authors:  Markus A Mayer; Anja Borsdorf; Martin Wagner; Joachim Hornegger; Christian Y Mardin; Ralf P Tornow
Journal:  Biomed Opt Express       Date:  2012-02-22       Impact factor: 3.732

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  42 in total

1.  ELHnet: a convolutional neural network for classifying cochlear endolymphatic hydrops imaged with optical coherence tomography.

Authors:  George S Liu; Michael H Zhu; Jinkyung Kim; Patrick Raphael; Brian E Applegate; John S Oghalai
Journal:  Biomed Opt Express       Date:  2017-09-20       Impact factor: 3.732

2.  Automatic detection of the foveal center in optical coherence tomography.

Authors:  Bart Liefers; Freerk G Venhuizen; Vivian Schreur; Bram van Ginneken; Carel Hoyng; Sascha Fauser; Thomas Theelen; Clara I Sánchez
Journal:  Biomed Opt Express       Date:  2017-10-23       Impact factor: 3.732

3.  Characterization of coronary artery pathological formations from OCT imaging using deep learning.

Authors:  Atefeh Abdolmanafi; Luc Duong; Nagib Dahdah; Ibrahim Ragui Adib; Farida Cheriet
Journal:  Biomed Opt Express       Date:  2018-09-21       Impact factor: 3.732

4.  The possibility of the combination of OCT and fundus images for improving the diagnostic accuracy of deep learning for age-related macular degeneration: a preliminary experiment.

Authors:  Tae Keun Yoo; Joon Yul Choi; Jeong Gi Seo; Bhoopalan Ramasubramanian; Sundaramoorthy Selvaperumal; Deok Won Kim
Journal:  Med Biol Eng Comput       Date:  2018-10-22       Impact factor: 2.602

5.  Automated identification of cone photoreceptors in adaptive optics optical coherence tomography images using transfer learning.

Authors:  Morgan Heisler; Myeong Jin Ju; Mahadev Bhalla; Nathan Schuck; Arman Athwal; Eduardo V Navajas; Mirza Faisal Beg; Marinko V Sarunic
Journal:  Biomed Opt Express       Date:  2018-10-10       Impact factor: 3.732

6.  Deep learning-based automated detection of retinal diseases using optical coherence tomography images.

Authors:  Feng Li; Hua Chen; Zheng Liu; Xue-Dian Zhang; Min-Shan Jiang; Zhi-Zheng Wu; Kai-Qian Zhou
Journal:  Biomed Opt Express       Date:  2019-11-11       Impact factor: 3.732

7.  Automatic segmentation of nine retinal layer boundaries in OCT images of non-exudative AMD patients using deep learning and graph search.

Authors:  Leyuan Fang; David Cunefare; Chong Wang; Robyn H Guymer; Shutao Li; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2017-04-27       Impact factor: 3.732

Review 8.  [Deep learning and neuronal networks in ophthalmology : Applications in the field of optical coherence tomography].

Authors:  M Treder; N Eter
Journal:  Ophthalmologe       Date:  2018-09       Impact factor: 1.059

9.  Deep learning for quality assessment of retinal OCT images.

Authors:  Jing Wang; Guohua Deng; Wanyue Li; Yiwei Chen; Feng Gao; Hu Liu; Yi He; Guohua Shi
Journal:  Biomed Opt Express       Date:  2019-11-04       Impact factor: 3.732

10.  Automated detection of mild and multi-class diabetic eye diseases using deep learning.

Authors:  Rubina Sarki; Khandakar Ahmed; Hua Wang; Yanchun Zhang
Journal:  Health Inf Sci Syst       Date:  2020-10-08
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