Literature DB >> 28267419

Expanding the repertoire of deadenylases.

Ilias Skeparnias1, Dimitrios Αnastasakis1, Athanasios-Nasir Shaukat1, Katerina Grafanaki1, Constantinos Stathopoulos1.   

Abstract

Deadenylases belong to an expanding family of exoribonucleases involved mainly in mRNA stability and turnover, with the exception of PARN which has additional roles in the biogenesis of several important non-coding RNAs, including miRNAs and piRNAs. Recently, PARN in C. elegans and its homolog PNLDC1 in B. mori were reported as the elusive trimmers mediating piRNA biogenesis. In addition, characterization of mammalian PNLDC1 in comparison to PARN, showed that is specifically expressed in embryonic stem and germ cells, as well as during early embryo development. Moreover, its expression is correlated with epigenetic events mediated by the de novo DNMT3b methyltransferase and knockdown in stem cells upregulates important genes that regulate multipotency. The recent data suggest that at least some new deadenylases may have expanded roles in cell metabolism as regulators of gene expression, through mRNA deadenylation, ncRNAs biogenesis and ncRNA-mediated mRNA targeting, linking essential mechanisms that regulate epigenetic control and transition events during differentiation. The possible roles of mammalian PNLDC1 along those dynamic networks are discussed in the light of new extremely important findings.

Entities:  

Keywords:  Deadenylases; PARN; PNLDC1; mRNA turnover; non-coding RNAs; piRNAs; poly(A) tail; stem cells

Mesh:

Substances:

Year:  2017        PMID: 28267419      PMCID: PMC5711463          DOI: 10.1080/15476286.2017.1300222

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  59 in total

1.  Identification and Functional Analysis of the Pre-piRNA 3' Trimmer in Silkworms.

Authors:  Natsuko Izumi; Keisuke Shoji; Yuriko Sakaguchi; Shozo Honda; Yohei Kirino; Tsutomu Suzuki; Susumu Katsuma; Yukihide Tomari
Journal:  Cell       Date:  2016-02-25       Impact factor: 41.582

Review 2.  PIWI-Interacting RNA: Its Biogenesis and Functions.

Authors:  Yuka W Iwasaki; Mikiko C Siomi; Haruhiko Siomi
Journal:  Annu Rev Biochem       Date:  2015-03-05       Impact factor: 23.643

3.  Regulation of Poly(A) Tail and Translation during the Somatic Cell Cycle.

Authors:  Jong-Eun Park; Hyerim Yi; Yoosik Kim; Hyeshik Chang; V Narry Kim
Journal:  Mol Cell       Date:  2016-05-05       Impact factor: 17.970

4.  BTG4 is a key regulator for maternal mRNA clearance during mouse early embryogenesis.

Authors:  Yusheng Liu; Xukun Lu; Junchao Shi; Xingjiang Yu; Xiaoxin Zhang; Kai Zhu; Zhaohong Yi; Enkui Duan; Lei Li
Journal:  J Mol Cell Biol       Date:  2016-05-17       Impact factor: 6.216

5.  PIWI proteins and their interactors in piRNA biogenesis, germline development and gene expression.

Authors:  Hsueh-Yen Ku; Haifan Lin
Journal:  Natl Sci Rev       Date:  2014-06       Impact factor: 17.275

Review 6.  Modulation of poly(A)-specific ribonuclease (PARN): current knowledge and perspectives.

Authors:  N A A Balatsos; P Maragozidis; D Anastasakis; C Stathopoulos
Journal:  Curr Med Chem       Date:  2012       Impact factor: 4.530

7.  A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.

Authors:  Alexei A Aravin; Ravi Sachidanandam; Deborah Bourc'his; Christopher Schaefer; Dubravka Pezic; Katalin Fejes Toth; Timothy Bestor; Gregory J Hannon
Journal:  Mol Cell       Date:  2008-09-26       Impact factor: 17.970

8.  Mouse Piwi interactome identifies binding mechanism of Tdrkh Tudor domain to arginine methylated Miwi.

Authors:  Chen Chen; Jing Jin; D Andrew James; Melanie A Adams-Cioaba; Jin Gyoon Park; Yahong Guo; Enrico Tenaglia; Chao Xu; Gerald Gish; Jinrong Min; Tony Pawson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-16       Impact factor: 11.205

Review 9.  Regulation of pluripotency by RNA binding proteins.

Authors:  Julia Ye; Robert Blelloch
Journal:  Cell Stem Cell       Date:  2014-09-04       Impact factor: 24.633

10.  Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.

Authors:  Weifeng Gu; Masaki Shirayama; Darryl Conte; Jessica Vasale; Pedro J Batista; Julie M Claycomb; James J Moresco; Elaine M Youngman; Jennifer Keys; Matthew J Stoltz; Chun-Chieh G Chen; Daniel A Chaves; Shenghua Duan; Kristin D Kasschau; Noah Fahlgren; John R Yates; Shohei Mitani; James C Carrington; Craig C Mello
Journal:  Mol Cell       Date:  2009-10-01       Impact factor: 17.970

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  2 in total

Review 1.  The Interplay between the RNA Decay and Translation Machinery in Eukaryotes.

Authors:  Adam M Heck; Jeffrey Wilusz
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-05-01       Impact factor: 10.005

2.  PNLDC1 is essential for piRNA 3' end trimming and transposon silencing during spermatogenesis in mice.

Authors:  Deqiang Ding; Jiali Liu; Kunzhe Dong; Uros Midic; Rex A Hess; Huirong Xie; Elena Y Demireva; Chen Chen
Journal:  Nat Commun       Date:  2017-10-10       Impact factor: 14.919

  2 in total

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