Literature DB >> 25512877

PIWI proteins and their interactors in piRNA biogenesis, germline development and gene expression.

Hsueh-Yen Ku1, Haifan Lin1.   

Abstract

PIWI-interacting RNAs (piRNAs) are a complex class of small non-coding RNAs that are mostly 24-32 nucleotides in length and composed of at least hundreds of thousands of species that specifically interact with the PIWI protein subfamily of the ARGONAUTE family. Recent studies revealed that PIWI proteins interact with a number of proteins, especially the TUDOR-domain-containing proteins, to regulate piRNA biogenesis and regulatory function. Current research also provides evidence that PIWI proteins and piRNAs are not only crucial for transposon silencing in the germline, but also mediate novel mechanisms of epigenetic programming, DNA rearrangements, mRNA turnover, and translational control both in the germline and in the soma. These new discoveries begin to reveal an exciting new dimension of gene regulation in the cell.

Entities:  

Keywords:  PIWI; RNA decay; TDRD; epigenetic; piRNA; translational regulation

Year:  2014        PMID: 25512877      PMCID: PMC4265212          DOI: 10.1093/nsr/nwu014

Source DB:  PubMed          Journal:  Natl Sci Rev        ISSN: 2053-714X            Impact factor:   17.275


  163 in total

1.  P-body formation is a consequence, not the cause, of RNA-mediated gene silencing.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Daniel Schweizer; Elisa Izaurralde
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

2.  Visiting "noncodarnia".

Authors:  Jeffrey M Perkel
Journal:  Biotechniques       Date:  2013-06       Impact factor: 1.993

3.  RNF17, a component of the mammalian germ cell nuage, is essential for spermiogenesis.

Authors:  Jieyan Pan; Mary Goodheart; Shinichiro Chuma; Norio Nakatsuji; David C Page; P Jeremy Wang
Journal:  Development       Date:  2005-08-10       Impact factor: 6.868

4.  Valois, a component of the nuage and pole plasm, is involved in assembly of these structures, and binds to Tudor and the methyltransferase Capsuléen.

Authors:  Joël Anne; Bernard M Mechler
Journal:  Development       Date:  2005-03-30       Impact factor: 6.868

5.  Drosophila PIWI associates with chromatin and interacts directly with HP1a.

Authors:  Brent Brower-Toland; Seth D Findley; Ling Jiang; Li Liu; Hang Yin; Monica Dus; Pei Zhou; Sarah C R Elgin; Haifan Lin
Journal:  Genes Dev       Date:  2007-09-15       Impact factor: 11.361

6.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

7.  The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.

Authors:  Masanobu Shoji; Takashi Tanaka; Mihoko Hosokawa; Michael Reuter; Alexander Stark; Yuzuru Kato; Gen Kondoh; Katsuya Okawa; Takeshi Chujo; Tsutomu Suzuki; Kenichiro Hata; Sandra L Martin; Toshiaki Noce; Satomi Kuramochi-Miyagawa; Toru Nakano; Hiroyuki Sasaki; Ramesh S Pillai; Norio Nakatsuji; Shinichiro Chuma
Journal:  Dev Cell       Date:  2009-12       Impact factor: 12.270

Review 8.  PIWI proteins and PIWI-interacting RNAs in the soma.

Authors:  Robert J Ross; Molly M Weiner; Haifan Lin
Journal:  Nature       Date:  2014-01-16       Impact factor: 49.962

9.  Mouse Piwi interactome identifies binding mechanism of Tdrkh Tudor domain to arginine methylated Miwi.

Authors:  Chen Chen; Jing Jin; D Andrew James; Melanie A Adams-Cioaba; Jin Gyoon Park; Yahong Guo; Enrico Tenaglia; Chao Xu; Gerald Gish; Jinrong Min; Tony Pawson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-16       Impact factor: 11.205

10.  Vreteno, a gonad-specific protein, is essential for germline development and primary piRNA biogenesis in Drosophila.

Authors:  Andrea L Zamparini; Marie Y Davis; Colin D Malone; Eric Vieira; Jiri Zavadil; Ravi Sachidanandam; Gregory J Hannon; Ruth Lehmann
Journal:  Development       Date:  2011-08-10       Impact factor: 6.868

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  68 in total

Review 1.  RNA-induced initiation of transcriptional silencing (RITS) complex structure and function.

Authors:  Sonali Bhattacharjee; Benjamin Roche; Robert A Martienssen
Journal:  RNA Biol       Date:  2019-06-18       Impact factor: 4.652

Review 2.  Expanding the repertoire of deadenylases.

Authors:  Ilias Skeparnias; Dimitrios Αnastasakis; Athanasios-Nasir Shaukat; Katerina Grafanaki; Constantinos Stathopoulos
Journal:  RNA Biol       Date:  2017-03-07       Impact factor: 4.652

Review 3.  C/D-box snoRNAs form methylating and non-methylating ribonucleoprotein complexes: Old dogs show new tricks.

Authors:  Marina Falaleeva; Justin R Welden; Marilyn J Duncan; Stefan Stamm
Journal:  Bioessays       Date:  2017-05-15       Impact factor: 4.345

4.  piRNA-823 delivered by multiple myeloma-derived extracellular vesicles promoted tumorigenesis through re-educating endothelial cells in the tumor environment.

Authors:  Beibei Li; Jiaxin Hong; Mei Hong; Yajun Wang; Tingting Yu; Sibin Zang; Qiuling Wu
Journal:  Oncogene       Date:  2019-03-19       Impact factor: 9.867

Review 5.  Beyond mRNA: The role of non-coding RNAs in normal and aberrant hematopoiesis.

Authors:  Mark C Wilkes; Claire E Repellin; Kathleen M Sakamoto
Journal:  Mol Genet Metab       Date:  2017-07-25       Impact factor: 4.797

6.  Unique sequence organization and small RNA expression of a "selfish" B chromosome.

Authors:  Yue Li; Xueyuan A Jing; John C Aldrich; C Clifford; Jian Chen; Omar S Akbari; Patrick M Ferree
Journal:  Chromosoma       Date:  2017-08-05       Impact factor: 4.316

Review 7.  Single nucleotide polymorphisms in piRNA-pathway genes: an insight into genetic determinants of human diseases.

Authors:  Jyoti Roy; Kalyani Anand; Swati Mohapatra; Rojalin Nayak; Trisha Chattopadhyay; Bibekanand Mallick
Journal:  Mol Genet Genomics       Date:  2019-10-14       Impact factor: 3.291

8.  Heterochromatin-Associated Proteins HP1a and Piwi Collaborate to Maintain the Association of Achiasmate Homologs in Drosophila Oocytes.

Authors:  Christopher C Giauque; Sharon E Bickel
Journal:  Genetics       Date:  2016-03-16       Impact factor: 4.562

Review 9.  What Drives Positive Selection in the Drosophila piRNA Machinery? The Genomic Autoimmunity Hypothesis.

Authors:  Justin P Blumenstiel; Alexandra A Erwin; Lucas W Hemmer
Journal:  Yale J Biol Med       Date:  2016-12-23

10.  Structural basis for arginine methylation-independent recognition of PIWIL1 by TDRD2.

Authors:  Heng Zhang; Ke Liu; Natsuko Izumi; Haiming Huang; Deqiang Ding; Zuyao Ni; Sachdev S Sidhu; Chen Chen; Yukihide Tomari; Jinrong Min
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-08       Impact factor: 11.205

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