Literature DB >> 25192462

Regulation of pluripotency by RNA binding proteins.

Julia Ye1, Robert Blelloch2.   

Abstract

Establishment, maintenance, and exit from pluripotency require precise coordination of a cell's molecular machinery. Substantial headway has been made in deciphering many aspects of this elaborate system, particularly with respect to epigenetics, transcription, and noncoding RNAs. Less attention has been paid to posttranscriptional regulatory processes such as alternative splicing, RNA processing and modification, nuclear export, regulation of transcript stability, and translation. Here, we introduce the RNA binding proteins that enable the posttranscriptional regulation of gene expression, summarizing current and ongoing research on their roles at different regulatory points and discussing how they help script the fate of pluripotent stem cells.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25192462      PMCID: PMC4372238          DOI: 10.1016/j.stem.2014.08.010

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  75 in total

1.  Lin28 modulates cell growth and associates with a subset of cell cycle regulator mRNAs in mouse embryonic stem cells.

Authors:  Bingsen Xu; Kexiong Zhang; Yingqun Huang
Journal:  RNA       Date:  2009-01-15       Impact factor: 4.942

2.  Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites.

Authors:  Rickard Sandberg; Joel R Neilson; Arup Sarma; Phillip A Sharp; Christopher B Burge
Journal:  Science       Date:  2008-06-20       Impact factor: 47.728

Review 3.  Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier.

Authors:  Akira Watanabe; Yasuhiro Yamada; Shinya Yamanaka
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-05       Impact factor: 6.237

4.  Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.

Authors:  Alfredo Castello; Bernd Fischer; Katrin Eichelbaum; Rastislav Horos; Benedikt M Beckmann; Claudia Strein; Norman E Davey; David T Humphreys; Thomas Preiss; Lars M Steinmetz; Jeroen Krijgsveld; Matthias W Hentze
Journal:  Cell       Date:  2012-05-31       Impact factor: 41.582

5.  The let-7 target gene mouse lin-41 is a stem cell specific E3 ubiquitin ligase for the miRNA pathway protein Ago2.

Authors:  Agnieszka Rybak; Heiko Fuchs; Kamyar Hadian; Lena Smirnova; Ellery A Wulczyn; Geert Michel; Robert Nitsch; Daniel Krappmann; F Gregory Wulczyn
Journal:  Nat Cell Biol       Date:  2009-11-08       Impact factor: 28.824

6.  The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events.

Authors:  Claude C Warzecha; Shihao Shen; Yi Xing; Russ P Carstens
Journal:  RNA Biol       Date:  2009-11-22       Impact factor: 4.652

7.  LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance.

Authors:  Melissa L Wilbert; Stephanie C Huelga; Katannya Kapeli; Thomas J Stark; Tiffany Y Liang; Stella X Chen; Bernice Y Yan; Jason L Nathanson; Kasey R Hutt; Michael T Lovci; Hilal Kazan; Anthony Q Vu; Katlin B Massirer; Quaid Morris; Shawn Hoon; Gene W Yeo
Journal:  Mol Cell       Date:  2012-09-06       Impact factor: 17.970

8.  Global analysis reveals multiple pathways for unique regulation of mRNA decay in induced pluripotent stem cells.

Authors:  Ashley T Neff; Ju Youn Lee; Jeffrey Wilusz; Bin Tian; Carol J Wilusz
Journal:  Genome Res       Date:  2012-04-25       Impact factor: 9.043

9.  Competition between ADAR and RNAi pathways for an extensive class of RNA targets.

Authors:  Diane Wu; Ayelet T Lamm; Andrew Z Fire
Journal:  Nat Struct Mol Biol       Date:  2011-09-11       Impact factor: 15.369

10.  Genetic exploration of the exit from self-renewal using haploid embryonic stem cells.

Authors:  Martin Leeb; Sabine Dietmann; Maike Paramor; Hitoshi Niwa; Austin Smith
Journal:  Cell Stem Cell       Date:  2014-01-09       Impact factor: 24.633

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  51 in total

1.  The ancestral gene repertoire of animal stem cells.

Authors:  Alexandre Alié; Tetsutaro Hayashi; Itsuro Sugimura; Michaël Manuel; Wakana Sugano; Akira Mano; Nori Satoh; Kiyokazu Agata; Noriko Funayama
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-07       Impact factor: 11.205

2.  Cytoplasmic poly(A)-binding protein 1 (PABPC1) interacts with the RNA-binding protein hnRNPLL and thereby regulates immunoglobulin secretion in plasma cells.

Authors:  Yuanzheng Peng; Juanjuan Yuan; Zhenchao Zhang; Xing Chang
Journal:  J Biol Chem       Date:  2017-06-13       Impact factor: 5.157

3.  The RNA exosome contributes to gene expression regulation during stem cell differentiation.

Authors:  Marta Lloret-Llinares; Evdoxia Karadoulama; Yun Chen; Luke A Wojenski; Geno J Villafano; Jette Bornholdt; Robin Andersson; Leighton Core; Albin Sandelin; Torben Heick Jensen
Journal:  Nucleic Acids Res       Date:  2018-11-30       Impact factor: 16.971

Review 4.  Mechanisms of protein homeostasis (proteostasis) maintain stem cell identity in mammalian pluripotent stem cells.

Authors:  Alireza Noormohammadi; Giuseppe Calculli; Ricardo Gutierrez-Garcia; Amirabbas Khodakarami; Seda Koyuncu; David Vilchez
Journal:  Cell Mol Life Sci       Date:  2017-07-26       Impact factor: 9.261

Review 5.  Expanding the repertoire of deadenylases.

Authors:  Ilias Skeparnias; Dimitrios Αnastasakis; Athanasios-Nasir Shaukat; Katerina Grafanaki; Constantinos Stathopoulos
Journal:  RNA Biol       Date:  2017-03-07       Impact factor: 4.652

6.  Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states.

Authors:  Yang Yang; Yu-Cheng T Yang; Jiapei Yuan; Zhi John Lu; Jingyi Jessica Li
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

7.  miR-367 stimulates Wnt cascade activation through degrading FBXW7 in NSCLC stem cells.

Authors:  Guodong Xiao; Boxiang Zhang; Jinying Meng; Jichang Wang; Chongwen Xu; Shou-Ching Tang; Xiang Li; Jing Zhang; Rui Liang; Hong Ren; Xin Sun
Journal:  Cell Cycle       Date:  2017-11-14       Impact factor: 4.534

8.  A PUF Hub Drives Self-Renewal in Caenorhabditis elegans Germline Stem Cells.

Authors:  Kimberly A Haupt; Kimberley T Law; Amy L Enright; Charlotte R Kanzler; Heaji Shin; Marvin Wickens; Judith Kimble
Journal:  Genetics       Date:  2019-11-18       Impact factor: 4.562

9.  EpiAlign: an alignment-based bioinformatic tool for comparing chromatin state sequences.

Authors:  Xinzhou Ge; Haowen Zhang; Lingjue Xie; Wei Vivian Li; Soo Bin Kwon; Jingyi Jessica Li
Journal:  Nucleic Acids Res       Date:  2019-07-26       Impact factor: 16.971

Review 10.  Biology of RNA Surveillance in Development and Disease.

Authors:  Brice Laffleur; Uttiya Basu
Journal:  Trends Cell Biol       Date:  2019-02-10       Impact factor: 20.808

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